| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,772,390 – 4,772,483 |
| Length | 93 |
| Max. P | 0.939608 |
| Location | 4,772,390 – 4,772,483 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 63.73 |
| Shannon entropy | 0.67475 |
| G+C content | 0.60096 |
| Mean single sequence MFE | -30.99 |
| Consensus MFE | -15.09 |
| Energy contribution | -13.96 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4772390 93 - 27905053 CAAUGGUCAGUGGGGUUCCGAGUU--GGCUAUUCGAGGGGCUUUCGGUAGAGGGGGGGGGGGGCUCUACUACUUCAACCGACUGGCCAACGACAA ...((((((((.((...(((((..--((((........)))))))))..((((..(..((....))..)..))))..)).))))))))....... ( -33.30, z-score = -0.98, R) >droSim1.chr3R 10973827 85 + 27517382 CAAUGGUCAGUGGGGUUCCGAGUU--GGCUAUUCGAGGGGCUU--------GCGGGAGGGGGGCUCUACUACUUCAACCGACUGGCCAACGACAA ...((((((((.((....(((((.--....)))))((((.(((--------.(....).))).))))..........)).))))))))....... ( -31.40, z-score = -1.36, R) >droSec1.super_0 4013310 85 + 21120651 CAAUGGUCAGUGGGGUUCCGAGUU--GGCUAUACGAGGGGUUU--------GCGGGAGGUGGGCUCUACUACUUCAGCCGACUGGCCAACGACAA ...((((((((.((...(((....--((((........)))).--------.)))(((((((......)))))))..)).))))))))....... ( -32.00, z-score = -1.65, R) >droYak2.chr3R 8816624 84 - 28832112 CAAUGGUCAGUGGGGUUCCGAGUUGUGGUUGCUCGGGGGGCCA--------UCGGGAGGGGGGCU---UCAUUUCAACCGACUGGCCAACGACAA ...((((((((.((...((((((.......))))))((((((.--------((....))..))))---)).......)).))))))))....... ( -37.80, z-score = -2.98, R) >droEre2.scaffold_4770 915348 84 + 17746568 CAAUGGUCAGUGGGGUUCCGAGUUGGGGCUGGUCGGGGGGCUC--------UCGGGAGGGGGGCU---UUACUUCAACCGACUGGCCAACGACAA ...((((((((.(((((((.....)))))(((...((((.(((--------((....))))).))---))...))).)).))))))))....... ( -35.30, z-score = -1.84, R) >droVir3.scaffold_13047 16864001 80 - 19223366 ----CAAUGUUGUGCCAAAGGGGGGAGGGUG---GGGAGUGGUC-------UUGGGUAGGAGAGACGCCUGCUGGCGCUG-UUGGUCAGCGACAA ----...(((((((((((...((.(..((..---((.....(((-------((........))))).))..))..).)).-)))))..)))))). ( -24.80, z-score = -0.58, R) >droMoj3.scaffold_6540 20874491 85 + 34148556 --CAAAUUGGUUUGGUUAGGUGGGAGGGGUGUGUGCGAGUGUGC-------GGGGCUAGGAGAGACGCCUGCUGGCGCUG-UUGGUCAGCGACAA --((((....))))((((((((....((.(.((..(....)..)-------).).))........)))))((((((.(..-..)))))))))).. ( -22.30, z-score = 0.99, R) >consensus CAAUGGUCAGUGGGGUUCCGAGUU__GGCUGUUCGAGGGGCUU________GCGGGAGGGGGGCUCUACUACUUCAACCGACUGGCCAACGACAA ...((((((((.((............((((........)))).............((((.((......)).))))..)).))))))))....... (-15.09 = -13.96 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:33 2011