| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,781,207 – 6,781,277 |
| Length | 70 |
| Max. P | 0.718016 |
| Location | 6,781,207 – 6,781,277 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 99.05 |
| Shannon entropy | 0.01312 |
| G+C content | 0.34762 |
| Mean single sequence MFE | -10.23 |
| Consensus MFE | -9.00 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.718016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6781207 70 + 23011544 AAAAAAUAUAUCGAAGUUAACUUCAAAAGAACCACAAGACAAUAUCCGGUCUUGACCAGUUCCAACGUUC ............((((....))))....((((..((((((........))))))....))))........ ( -12.70, z-score = -2.81, R) >droSec1.super_3 2319986 70 + 7220098 AAAAAAUAUAUCUAAGUUAACUUCAAAAGAACCACAAGACAAUAUCCGGUCUUGACCAGUUCCAACGUUC ............................((((..((((((........))))))....))))........ ( -9.00, z-score = -1.57, R) >droSim1.chr2L 6581813 70 + 22036055 AAAAAAUAUAUCUAAGUUAACUUCAAAAGAACCACAAGACAAUAUCCGGUCUUGACCAGUUCCAACGUUC ............................((((..((((((........))))))....))))........ ( -9.00, z-score = -1.57, R) >consensus AAAAAAUAUAUCUAAGUUAACUUCAAAAGAACCACAAGACAAUAUCCGGUCUUGACCAGUUCCAACGUUC ............................((((..((((((........))))))....))))........ ( -9.00 = -9.00 + 0.00)
| Location | 6,781,207 – 6,781,277 |
|---|---|
| Length | 70 |
| Sequences | 3 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 99.05 |
| Shannon entropy | 0.01312 |
| G+C content | 0.34762 |
| Mean single sequence MFE | -14.87 |
| Consensus MFE | -14.10 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6781207 70 - 23011544 GAACGUUGGAACUGGUCAAGACCGGAUAUUGUCUUGUGGUUCUUUUGAAGUUAACUUCGAUAUAUUUUUU .......((((((...((((((........)))))).)))))).((((((....)))))).......... ( -16.40, z-score = -1.70, R) >droSec1.super_3 2319986 70 - 7220098 GAACGUUGGAACUGGUCAAGACCGGAUAUUGUCUUGUGGUUCUUUUGAAGUUAACUUAGAUAUAUUUUUU ...((..((((((...((((((........)))))).))))))..))....................... ( -14.10, z-score = -0.96, R) >droSim1.chr2L 6581813 70 - 22036055 GAACGUUGGAACUGGUCAAGACCGGAUAUUGUCUUGUGGUUCUUUUGAAGUUAACUUAGAUAUAUUUUUU ...((..((((((...((((((........)))))).))))))..))....................... ( -14.10, z-score = -0.96, R) >consensus GAACGUUGGAACUGGUCAAGACCGGAUAUUGUCUUGUGGUUCUUUUGAAGUUAACUUAGAUAUAUUUUUU ...((..((((((...((((((........)))))).))))))..))....................... (-14.10 = -14.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:00 2011