| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,676,476 – 4,676,586 |
| Length | 110 |
| Max. P | 0.510249 |
| Location | 4,676,476 – 4,676,586 |
|---|---|
| Length | 110 |
| Sequences | 9 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 70.38 |
| Shannon entropy | 0.58413 |
| G+C content | 0.40728 |
| Mean single sequence MFE | -21.96 |
| Consensus MFE | -9.65 |
| Energy contribution | -9.39 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4676476 110 + 27905053 UACAGGCUACGGAAUACGUUUUCCAUGGCUCUUACAUCUUGCUACUAUCUGUUCUUUCCGUAUGCAAAAAGUAAACACUCUGAAAAUGAGUGUGUAAUUU-UCCAAGGCAA (((.(((((.((((......)))).))))).((((...(((((((..............))).))))...))))((((((.......)))))))))....-.......... ( -22.64, z-score = -1.03, R) >droSim1.chr3R 10897484 110 - 27517382 UACAGGCUACGGAAUACGUUUUCCAUGGCUCUUACAUCUUGCUACUAUCUGUUCUUUCCGUAUGCAAAAAGUAAACACUCUGAAAAUGAGUGUGUAAUUU-UCCAAGGCAA (((.(((((.((((......)))).))))).((((...(((((((..............))).))))...))))((((((.......)))))))))....-.......... ( -22.64, z-score = -1.03, R) >droSec1.super_0 3939285 110 - 21120651 UACAGGCUACGGAAUACGUUUUCCAUGGCUCUUACAUCUUGCUACUAUCUGUUCUUUCCGUAUGCAAAAAGUAAACACUCUGAAAAUGAGUGUGUAAUUU-UCCAAGGCAA (((.(((((.((((......)))).))))).((((...(((((((..............))).))))...))))((((((.......)))))))))....-.......... ( -22.64, z-score = -1.03, R) >droYak2.chr3R 8739238 110 + 28832112 UACAGGCUACGGAAUACAUUCUACAUGGCUCUUACAUCUUGCUACUAUCUGUUCUUGCCGUAUGCAAAGAGUAAACACUCUGAAAAUGAGUGUGUAAUUU-UCCAAGGCAA .....(((..(((((((((((...(((((....(((.............)))....)))))......(((((....)))))......)))))))).....-)))..))).. ( -23.42, z-score = -0.59, R) >droEre2.scaffold_4770 839435 110 - 17746568 UACAGGCUACGGAAUACAUCCUACACGACUCUUACAUCUUGCUGCUAUCUGUUCUUUCCGCAUGCAAAAAGUAAACACUCUGAAAAUGAGUGUGUAAUUU-UCCAAGGCAA .....(((..(((((((..............((((...(((((((..............))).))))...))))((((((.......)))))))))...)-)))..))).. ( -22.24, z-score = -1.06, R) >droAna3.scaffold_13340 3451477 85 + 23697760 -----------------------UACAGCAGG-AUA-CAGGCUACUAUCUCUUAGUCUCGUAUGCAAAAAGUAAACACUCUGAAAAUGAGUGUGUAAUUU-CCCAAGGCAA -----------------------....((.(.-(((-(((((((........)))))).)))).).........((((((.......)))))).......-......)).. ( -19.90, z-score = -1.71, R) >dp4.chr2 7692449 95 - 30794189 --------------UACAGGCUGGAGAAUAUGCAUUUGUAGC-GCCCUCCCCGCCUCCCGUAUGCAAAAAGUAAACACUCUGAAAAUGAGUGUGUAAUUU-CCCAAGGCAA --------------.....((((((((...(((((..(..((-(.......)))..)....)))))........((((((.......))))))....)))-))...))).. ( -21.80, z-score = -1.19, R) >droPer1.super_3 1503325 94 - 7375914 --------------UACAGGCUGGAGAAUAUGCAU--GUAGC-GCCCUCCCCGCCUCCCGUAUGCAAAAAGUAAACACUCUGAAAAUGAGUGUGUAAUUUUCCCAAGGCAA --------------.....((((((((((.(((((--(..(.-((.......))...)..))))))........((((((.......))))))...)))))))...))).. ( -23.10, z-score = -1.74, R) >droGri2.scaffold_15074 7458491 83 + 7742996 ---------------------UCCGGGAUACGGAA----CACUUUUCGAGCGCGCACUCUUAUGCAAAG-GUAAACAUUUUGAAA-UGAGUGUGUAAUUU-UCUAUGGCAA ---------------------((((.....)))).----............((((((((.....(((((-.......)))))...-.)))))))).....-.......... ( -19.30, z-score = -0.96, R) >consensus UACAGGCUACGGAAUACAUUCUCCAUGGCUCUUACAUCUUGCUACUAUCUGUUCUUCCCGUAUGCAAAAAGUAAACACUCUGAAAAUGAGUGUGUAAUUU_UCCAAGGCAA ..............................................................(((...((((..((((((.......))))))...)))).......))). ( -9.65 = -9.39 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:19 2011