| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,623,464 – 4,623,559 |
| Length | 95 |
| Max. P | 0.913081 |
| Location | 4,623,464 – 4,623,559 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 67.35 |
| Shannon entropy | 0.64251 |
| G+C content | 0.55093 |
| Mean single sequence MFE | -35.14 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.47 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.83 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4623464 95 + 27905053 UUCGAUAUCGUG---------CUUCUCCGUGUGGAAGCUCUCUUUGAGUUUGGAG--CCAGGAUCCGUCCGGCGGAC-CACAGUCCCAUUGUGGGGCGCCAGGAUAU ......(((.((---------((((.((....))((((((.....))))))))))--.)).)))..((((((((..(-((((((...)))))))..)))).)))).. ( -34.70, z-score = -0.86, R) >droAna3.scaffold_13340 11032433 104 + 23697760 UUCAGUAUCGCGUUUGCUCGCCUUUUCUCCCUGGAAGCUUUCAUUGGGCUUGGAG--CCAGGAUCCGACCUGUGCUU-CAACGGUCCAUUGUGUGGCACUAGGAUGU .........(((......)))........(((((..(((..((.(((((((((((--(((((......)))).))))-))..)))))).))...))).))))).... ( -36.20, z-score = -1.49, R) >droEre2.scaffold_4770 783440 95 - 17746568 UUCGAUAUCGUG---------CUUCUCCGUCUGGAAGCUCUCCUUGAGUUUGGAG--CCAGGAUCCGUCCGGCGGCC-CACAGUCCCAUUGUGGGGCGCCAGGAUAU ......(((.((---------((((.((....))((((((.....))))))))))--.)).)))..((((((((.((-((((((...)))))))).)))).)))).. ( -39.20, z-score = -1.93, R) >droYak2.chr3R 8685219 95 + 28832112 UUCGAUAUCGUG---------CUUCCCCGUCUGGAAGCUCUCUUUGAGUUUGGAG--CCGGGAUCCGUCCGGCGGCC-CACAGUCCCAUUGUGGGGCGCCAGGAUAU ...(((..((.(---------((((.((....))((((((.....))))))))))--)))..))).((((((((.((-((((((...)))))))).)))).)))).. ( -42.80, z-score = -2.62, R) >droSec1.super_0 3886592 95 - 21120651 UUCGAUAUCGUG---------CUUCUCCGUGUGGAAGCUCUCUUUGAGUUUGGAG--CCAGGAUCCGUCCGGCGGAC-CACAGUCCCAUUGUGGGGCGCCAGGAUAU ......(((.((---------((((.((....))((((((.....))))))))))--.)).)))..((((((((..(-((((((...)))))))..)))).)))).. ( -34.70, z-score = -0.86, R) >droSim1.chr3R 10848733 95 - 27517382 UUCGAUAUCGCG---------CUUCUCCAUGUGGAAGCUCUCUUUGAGUUUGGAG--CCAGGAUCCGUCCGGCGGAC-CACAGUCCCAUUGUGGGGCGCCAGGACAU ...(((...(.(---------((((.((....))((((((.....))))))))))--))...))).((((((((..(-((((((...)))))))..)))).)))).. ( -37.60, z-score = -1.66, R) >droGri2.scaffold_14906 5484941 92 - 14172833 ------UUCGUU---------CACAUGCACGUGGAAGCACUGUUUCUCUCUGGAGAUCUGCGGUUGCUCCAAUUUACGCACGGCCCCAUUGUGGGGCAUUAAGAUCU ------...(.(---------(.(.(((...((((.(((((((.((((....))))...)))).)))))))......))).)(((((.....))))).....)).). ( -30.50, z-score = -1.86, R) >droWil1.scaffold_181089 4618754 80 + 12369635 ------UUCGUC---------GUUUGGAUGGUGGACAUGGUAGCUCUGUUUUGCU--CCAUGUUCUGGUUUACGCUG-UAUAGCUCCAUUAUGGGAGU--------- ------......---------((.(((((.(.((((((((.(((........)))--))))))))).))))).))..-....(((((......)))))--------- ( -25.40, z-score = -2.24, R) >consensus UUCGAUAUCGUG_________CUUCUCCGUGUGGAAGCUCUCUUUGAGUUUGGAG__CCAGGAUCCGUCCGGCGGAC_CACAGUCCCAUUGUGGGGCGCCAGGAUAU .............................(((((((((((.....))))))......)))))....((((((((......).(((((.....)))))))).)))).. (-14.13 = -14.47 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:16 2011