| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,612,868 – 4,612,918 |
| Length | 50 |
| Max. P | 0.979270 |
| Location | 4,612,868 – 4,612,918 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 94.80 |
| Shannon entropy | 0.09161 |
| G+C content | 0.46000 |
| Mean single sequence MFE | -12.80 |
| Consensus MFE | -12.14 |
| Energy contribution | -12.54 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4612868 50 + 27905053 CGAAGAACUUUGAAAAGAACGCUCCGCUUUGCGGUAUGCUCUUUACAUGU ..........((.(((((.((..((((...))))..)).))))).))... ( -10.40, z-score = -0.93, R) >droSim1.chr3R 10838307 50 - 27517382 CGAAGAACUUUGAAAAGAACGCUCCGCUUUGCGGUGUGCUCUUUACAUGU ..........((.(((((.(((.((((...)))).))).))))).))... ( -14.10, z-score = -2.05, R) >droSec1.super_0 3876323 50 - 21120651 CGAAGAACUUUGAAAAGAACGCUCCGCUUUUCGGUGUGCUCUUUACAUGU ..........((.(((((.(((.(((.....))).))).))))).))... ( -11.30, z-score = -1.08, R) >droYak2.chr3R 8674481 50 + 28832112 CCAAGAACUUUGAAAAGAACGCUCCGCUUUGCGGUGUGCUCUUUACAUGU ..........((.(((((.(((.((((...)))).))).))))).))... ( -14.10, z-score = -2.33, R) >droEre2.scaffold_4770 772990 50 - 17746568 CCAAGCAGUUUGAAAAGAACGCUCCGCUUCGCGGUGUGCUCUUUACAUGU ..........((.(((((.(((.((((...)))).))).))))).))... ( -14.10, z-score = -1.47, R) >consensus CGAAGAACUUUGAAAAGAACGCUCCGCUUUGCGGUGUGCUCUUUACAUGU ..........((.(((((.(((.((((...)))).))).))))).))... (-12.14 = -12.54 + 0.40)
| Location | 4,612,868 – 4,612,918 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 94.80 |
| Shannon entropy | 0.09161 |
| G+C content | 0.46000 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -13.14 |
| Energy contribution | -13.18 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.979270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4612868 50 - 27905053 ACAUGUAAAGAGCAUACCGCAAAGCGGAGCGUUCUUUUCAAAGUUCUUCG ...((.(((((((...((((...))))...))))))).)).......... ( -12.40, z-score = -2.12, R) >droSim1.chr3R 10838307 50 + 27517382 ACAUGUAAAGAGCACACCGCAAAGCGGAGCGUUCUUUUCAAAGUUCUUCG ...((.(((((((.(.((((...)))).).))))))).)).......... ( -14.40, z-score = -2.88, R) >droSec1.super_0 3876323 50 + 21120651 ACAUGUAAAGAGCACACCGAAAAGCGGAGCGUUCUUUUCAAAGUUCUUCG ...((.(((((((.(.(((.....))).).))))))).)).......... ( -12.40, z-score = -1.93, R) >droYak2.chr3R 8674481 50 - 28832112 ACAUGUAAAGAGCACACCGCAAAGCGGAGCGUUCUUUUCAAAGUUCUUGG ...((.(((((((.(.((((...)))).).))))))).)).......... ( -14.40, z-score = -2.35, R) >droEre2.scaffold_4770 772990 50 + 17746568 ACAUGUAAAGAGCACACCGCGAAGCGGAGCGUUCUUUUCAAACUGCUUGG ...((.(((((((.(.((((...)))).).))))))).)).......... ( -14.40, z-score = -1.51, R) >consensus ACAUGUAAAGAGCACACCGCAAAGCGGAGCGUUCUUUUCAAAGUUCUUCG ...((.(((((((.(.((((...)))).).))))))).)).......... (-13.14 = -13.18 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:14 2011