| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,612,589 – 4,612,679 |
| Length | 90 |
| Max. P | 0.701229 |
| Location | 4,612,589 – 4,612,679 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.48 |
| Shannon entropy | 0.52155 |
| G+C content | 0.33951 |
| Mean single sequence MFE | -20.68 |
| Consensus MFE | -8.87 |
| Energy contribution | -8.79 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4612589 90 + 27905053 CUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGG---AAAUGGAUGGGGAAAAAUUAGAAAA------------------ (((((((.(((.(((((..((((.......(((((((((.....)))))))))......))))..---))))).))).....)))))))....------------------ ( -23.82, z-score = -3.31, R) >droSec1.super_0 3876032 90 - 21120651 CUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGG---AAAUGGAUGGGGAAAAAUUAGAAAA------------------ (((((((.(((.(((((..((((.......(((((((((.....)))))))))......))))..---))))).))).....)))))))....------------------ ( -23.82, z-score = -3.31, R) >droYak2.chr3R 8674183 90 + 28832112 CUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGG---AAAUGGAUGGGGAAAAAUUAGAAAA------------------ (((((((.(((.(((((..((((.......(((((((((.....)))))))))......))))..---))))).))).....)))))))....------------------ ( -23.82, z-score = -3.31, R) >droEre2.scaffold_4770 772706 90 - 17746568 CUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGG---AAAUGGAUGGGGAAAAAUUAGAAAA------------------ (((((((.(((.(((((..((((.......(((((((((.....)))))))))......))))..---))))).))).....)))))))....------------------ ( -23.82, z-score = -3.31, R) >droAna3.scaffold_13340 11022372 90 + 23697760 CUGAUUUAUGCGCAUUUUUCUUAUUGUUGAUCAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGG---AAAUAAACGAGGAAAAAUUAGAAAA------------------ (((((((...((....(((((..(...((((((((((((.....))))))).)))))...)..))---)))....)).....)))))))....------------------ ( -19.00, z-score = -0.95, R) >dp4.chr2 27268187 111 + 30794189 UUGAUUUAUGCGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGUGUUAUCUGUGCGAGAGGAGGAAAAACGUAAAUGCCAGAAGGAAAAACGAAUGAGAAAA ....(((((.....((((((((((...((((((((((((.....)))))))).))))...))))))))))........(((.....((....))....))).))))).... ( -21.40, z-score = 0.13, R) >droPer1.super_6 2558179 111 + 6141320 UUGAUUUAUGCGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGUGUUAUCUGUGCGAGAGGAGGAAAAACGUAAAUGCCAGAAGGAAAAACGAAUGAGAAAA ....(((((.....((((((((((...((((((((((((.....)))))))).))))...))))))))))........(((.....((....))....))).))))).... ( -21.40, z-score = 0.13, R) >droWil1.scaffold_181089 4609495 86 + 12369635 UUGAUUUAUGUGCAUUUUUUCUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCAAA----GAGAAGAAUGAAAUGGAAAAA--------------------- ....(((((...((((((((((.((((.(((.((((((((........))))))))))).)))))----))).))))))..)))))....--------------------- ( -21.10, z-score = -2.43, R) >droVir3.scaffold_13047 17357930 84 - 19223366 UUGAUUUAUGCACAUUCUUCGUAUUGUUGAUUAGCUCAAUAUUCUUGAGUUGGGUUAUCU-UAAAAGAACGGGAAUAGAAAAAAA-------------------------- .............(((((.(((....((((.(((((((((........)))))))))..)-)))....)))))))).........-------------------------- ( -14.00, z-score = -0.45, R) >droMoj3.scaffold_6540 30351787 95 - 34148556 UUAAUUUAUGCGCAUUCUUCGUGUUAUUGAUUAGCUCAAUAUUCUUGAGUUGGGUUAUCUAAAGAGACGAAUAUGAAUGGAAAGGGAAAAUGAGA---------------- ............((((((((((.((.(((..(((((((((........)))))))))..))).)).)))))...)))))................---------------- ( -19.90, z-score = -1.13, R) >droGri2.scaffold_14906 5471132 81 - 14172833 UUGAUCUAUGCACAUUCUUCGUAUUGUUGAUUAGCUCAAUAUUCUUGAGUUGGGUUAUCUGCAAG---AAAUAAAAGUGGAAAA--------------------------- ....(((((.....(((((.(((.......(((((((((.....)))))))))......))))))---))......)))))...--------------------------- ( -15.42, z-score = -0.75, R) >consensus UUGAUUUAUGCGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGG___AAAUGAAAGGGGAAAAAUUAGAAAA__________________ .......................((((.(((.((((((((........))))))))))).))))............................................... ( -8.87 = -8.79 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:12 2011