| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,604,133 – 4,604,248 |
| Length | 115 |
| Max. P | 0.831837 |
| Location | 4,604,133 – 4,604,248 |
|---|---|
| Length | 115 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 66.23 |
| Shannon entropy | 0.73617 |
| G+C content | 0.53058 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -15.20 |
| Energy contribution | -14.65 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.61 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4604133 115 - 27905053 CAAGUUCUUAGAAUUGUACCACGCUGAAAUGUGGUCCCGUCCGGAAAUCACGCGGGGUCGCGAGAUCCAACUCAAUGAGAUCAAGGAACUGCUCGUACCCACGAGCCAUCCAAUC----- ..(((((((....................((((..(((((...(....)..)))))..)))).((((((......)).)))).)))))))((((((....)))))).........----- ( -35.10, z-score = -1.62, R) >droAna3.scaffold_13340 11013546 112 - 23697760 CAAGUUCCUGGAACUGUAUCACACGGAGAUGUGGUCCUCGCCAGACAAUACUCGGGGACGCGAGAUUCAGCUGUCGGAGAUAAAAGAGCUCCUCGUACCAUUGCGCCAAUAC-------- ..(((((...))))).........((.((((.((((((((..((......)))))))))(((((((......)))((((.........)))))))).)))))...)).....-------- ( -26.70, z-score = 1.20, R) >droEre2.scaffold_4770 764178 115 + 17746568 CAAGUUCUUAGAGUUGUACCACGUUGAUAUGUGGUCCCGUCCGGAAAUUACGCGGGGUCGCGAGAUCCGACUUACGGAGAUCAGGGAACUGCUCGUCCCCACGAGCCAUCCAAAC----- ..((((((..((.(((((((((((....))))))....(((((.......))..(((((....)))))))).)))))...))..))))))((((((....)))))).........----- ( -37.60, z-score = -0.94, R) >droYak2.chr3R 8665527 115 - 28832112 CAAGUUCCUAGAGUUGUACCACGCCGAAAUGUGGUCCCGUCCGGACAUUACGCGGGGUCGCGAGAUCCGACUUUCGGAGAUCAAGGAACUGCUCGUACCCCCAAACCAUCCAAAC----- ..........((((.((.((..........(((..((((..((.......))))))..)))((..((((.....))))..))..)).)).)))).....................----- ( -33.00, z-score = -0.33, R) >droSec1.super_0 3867565 115 + 21120651 CAAGUUCUUAGAAUUGUACCACGCUGAAAUGUGGUCCCGUCCGGACAUUACGCGGGGUCGCGAGAUCCAACUCAAUGAGAUCAAGGAACUGCUCGUACCCGCGAGCCAUCCAAUC----- ..(((((((.((.....((((((......)))))).((....)).((((..(..(((((....)))))..)..))))...)).)))))))((((((....)))))).........----- ( -34.80, z-score = -1.19, R) >droSim1.chr3R 10828995 115 + 27517382 CAAGUUCUUAGAAUUGUACCACGCUGAAAUGUGGUCCCGUCCGGACAUUACGCGGGGUCGCGAGAUCCAACUCAAUGAGAUCAAGGAACUGCUCGUACCCGCGAGCCAUCCAAUC----- ..(((((((.((.....((((((......)))))).((....)).((((..(..(((((....)))))..)..))))...)).)))))))((((((....)))))).........----- ( -34.80, z-score = -1.19, R) >droMoj3.scaffold_6540 30341903 117 + 34148556 CAAGUUUCUCGAGUUGUACGACAAGGAAAUGUGGAGUGAUCCAAAUUCAACGCGCGGUCGCGAGGUUCUGCUCUCUGAGAUAAAGGAGCUUAAGAUACCGCCGCAAGCCCACCAAUC--- ......(((((((..(((.(((...(((...((((....))))..)))..((((....))))..))).))).))).))))....((.((((..(.......)..)))))).......--- ( -29.10, z-score = 0.46, R) >droVir3.scaffold_13047 17346622 120 + 19223366 CAAAUUUCUCGAGUUGUAUCACUGCGAAAUGUGGUCAGCAGCGAACAUAACUCGCGGUCGGGAGGUACAGCUCUCAGAGAUCAAGGAGCUAAGGACACCGCCACAAACGCGUUCUUAAUC ...(((((((((((((.(((((........))))))))).((((.......))))..)))))))))...(((((..(....)..)))))(((((((..((.......)).)))))))... ( -35.10, z-score = -1.45, R) >droGri2.scaffold_14906 5459176 90 + 14172833 CAAGUUCCUUGAGCUGCACCGCUGCGAGAUGUGGUCAGCGCCAAAUAAAAUACGCGGUCGUCAGAUACAGCUCUCCGAGAUCAGGGAGCU------------------------------ ..((((((((((((((.(((((........)))))))))..............((.(((....)))...)).........))))))))))------------------------------ ( -31.90, z-score = -1.84, R) >droWil1.scaffold_181089 4602040 99 - 12369635 CAAGUUCCUAGAGCUAUACAACUGUGAGAUGUGGUCAAUGCCGAAUAUUACACGUGGCCGUGAAGUUCAUCUGUCCGAGAUUAAGGAAUUGCAAACACC--------------------- ..(((((((.(((((.(((.(((((((....((((....))))....))))).))....))).)))))((((.....))))..))))))).........--------------------- ( -23.00, z-score = -0.62, R) >dp4.chr2 27259787 100 - 30794189 AAAGUUCCUCGAGUUGUACCACUGCGAGAUGUGGUCAGCGCCGGACAUGAUCCGCGGACGCGAGGUGCAGCUUUCGGAAAUCAAGGAGCUCCUCACACCC-------------------- ..(((((((.((((((.(((((........))))))))).(((((..((((((((....))).))).))...)))))...)).)))))))..........-------------------- ( -34.60, z-score = -0.86, R) >droPer1.super_6 2549817 100 - 6141320 AAAGUUCCUCGAGUUGUACCACUGCGAGAUGUGGUCAGCGCCGGACAUGAUCCGCGGACGCGAGGUGCAGCUUUCGGAAAUCAAGGAGCUCCUCACACCC-------------------- ..(((((((.((((((.(((((........))))))))).(((((..((((((((....))).))).))...)))))...)).)))))))..........-------------------- ( -34.60, z-score = -0.86, R) >consensus CAAGUUCCUAGAGUUGUACCACGCCGAAAUGUGGUCCCCUCCGGACAUUACGCGGGGUCGCGAGAUCCAGCUCUCGGAGAUCAAGGAACUGCUCGUACCC_CGAGCCAUCCA________ ..(((((((.((.....(((((........)))))...............((((....))))..................)).))))))).............................. (-15.20 = -14.65 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:12 2011