| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,598,648 – 4,598,722 |
| Length | 74 |
| Max. P | 0.586273 |
| Location | 4,598,648 – 4,598,722 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 63.73 |
| Shannon entropy | 0.64762 |
| G+C content | 0.30681 |
| Mean single sequence MFE | -9.66 |
| Consensus MFE | -6.50 |
| Energy contribution | -5.98 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.60 |
| Mean z-score | -0.03 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4598648 74 + 27905053 UAUUUAUUACCAUAUGUGUAUAUUGCAUAAGUGGUC---UACCAUGACUAAACUAAGCAAAAGAGUAUUCCUCAAAA ........(((((.(((((.....))))).))))).---.......................(((.....))).... ( -10.80, z-score = -0.66, R) >droYak2.chr3R 8660182 75 + 28832112 --UAUAUUACUAUGUGUGUAUAUUGCACAAGUAAUUAUUUAUUAAGACUUAACUUAACAAAAGGGUAUUUCGGUGAG --...((((((.((((((.....))))))))))))...((((..(((.....(((.....)))....)))..)))). ( -10.60, z-score = -0.01, R) >droSec1.super_0 3862378 74 - 21120651 UAUUUAUUACCAUAUGUGUAUAUUGCAUAAGUGGUC---UACCAUGACUAAACUAAGCAAAAGAGCAUUCCUCAAAA .............((((...(.((((.((..(((((---......)))))...)).)))).)..))))......... ( -10.60, z-score = -0.47, R) >droSim1.chr3R 10821963 74 - 27517382 UAUUUAUUACCAUAUGUGUAUGUUGCAUAGGUGGUC---UACUAUGACUGAACUAAGCAAAAGAGUAUUCCCCAAAA ............((((((.....))))))((.((..---((((.((.((......))))....))))..)))).... ( -11.80, z-score = 0.00, R) >droWil1.scaffold_181089 4596524 56 + 12369635 -------AAUUAUAGAGACAUUUUGCCUGUUUAA------AUCAUGA---GACUCG--AAGUUGAGAUUCCAAA--- -------........(((((.......)))))..------.....((---(.((((--....)))).)))....--- ( -4.50, z-score = 1.00, R) >consensus UAUUUAUUACCAUAUGUGUAUAUUGCAUAAGUGGUC___UACCAUGACUAAACUAAGCAAAAGAGUAUUCCUCAAAA ........(((((.(((((.....))))).))))).......................................... ( -6.50 = -5.98 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:11 2011