| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,588,067 – 4,588,170 |
| Length | 103 |
| Max. P | 0.888555 |
| Location | 4,588,067 – 4,588,170 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 64.50 |
| Shannon entropy | 0.59662 |
| G+C content | 0.38801 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -10.66 |
| Energy contribution | -11.17 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4588067 103 + 27905053 --------CAAGGGAAGUUCUCUUUAGCCAAAUUGUUUUGGCAGCAGCAGUGUGGGUUAAAUUCAU-AUUGCCAGCUCUAAAGUAAAGAGAAAUUACUUGUAAUCCCUAAAA------------------ --------..(((((..(((((((((((((((....))))))(((.(((((((((((...))))))-)))))..)))......))))))))).(((....))))))))....------------------ ( -36.00, z-score = -4.96, R) >droSim1.chr3R 10811022 103 - 27517382 --------CAAGGGAAGUUCUCAUUAGCCAAAUUGUUUUGGCAGCAGCAGUGUGGGUUUACUUCAU-AAUGCCAGCUCUAAAGUAAAGAGAAAUUACUUGUAAUCCCUAAAA------------------ --------..(((((..(((((....((((((....))))))(((.(((.((((((.....)))))-).)))..)))..........))))).(((....))))))))....------------------ ( -28.00, z-score = -2.17, R) >droSec1.super_0 3851916 103 - 21120651 --------CAAGGGAAGUUCUCCUUAGCCAAAUUGUUUUGGCAGCAGCAGUAUGGGUUUAAUUCAU-AAUGCCAGCUCUAAAGUAAAGAGAAAUUACUUGUAAUCCCUAAAA------------------ --------..(((((..(((((.(((((((((....))))))(((.(((.(((((((...))))))-).)))..)))......))).))))).(((....))))))))....------------------ ( -28.20, z-score = -2.51, R) >droYak2.chr3R 8649384 101 + 28832112 --------CAAGGGAAGUACUCUUCAGCCAAAUUGUUU-GGCAGCAGCAGUGUGGGUUUAAUCCAU-AUUGGCAGCUCUAAAGUAAGGAGAAAUUACUUGUAAUCCCCAAA------------------- --------...((((((((.(((((.(((((.....))-)))(((.(((((((((((...))))))-))).)).))).........)))))...)))).....))))....------------------- ( -29.90, z-score = -2.11, R) >droEre2.scaffold_4770 748278 90 - 17746568 --------CAAGGAAAGUACGCUUUAGCCAAAUUGUUUUGGCAGC------------UUAAUCCAU-AUUGGCAGCUCUAAGGUAAAGAGGAGUUACUUGUAAUCCCCAAG------------------- --------...(((...(((((((((((((((....))))))(((------------(....((..-...)).)))).))))))...(((......)))))).))).....------------------- ( -19.90, z-score = -0.28, R) >droWil1.scaffold_181089 7782315 130 - 12369635 AAAAAGAAGAAAAAAACUUUCGUUUGGUUUAGCUUUAAUGCCAAAAGUUCGACAAUUUCAAUCGAUUAGUGGCAAUCGUGAUAAAUGCCGGCGCCCAUGAGAAAAUUUGCUGUUGCCAUUGGCUUCACAC ..((((..(((..((((....))))..)))..))))..(((((.....((((.........))))....)))))...((((..((((.((((((..((......))..)).)))).))))....)))).. ( -26.30, z-score = 0.45, R) >consensus ________CAAGGGAAGUUCUCUUUAGCCAAAUUGUUUUGGCAGCAGCAGUGUGGGUUUAAUCCAU_AUUGCCAGCUCUAAAGUAAAGAGAAAUUACUUGUAAUCCCUAAAA__________________ ..........(((((...........((((((....)))))).................................((((.......)))).............)))))...................... (-10.66 = -11.17 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:10 2011