| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,581,939 – 4,582,031 |
| Length | 92 |
| Max. P | 0.853102 |
| Location | 4,581,939 – 4,582,031 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 83.56 |
| Shannon entropy | 0.29844 |
| G+C content | 0.33460 |
| Mean single sequence MFE | -12.47 |
| Consensus MFE | -6.71 |
| Energy contribution | -8.08 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4581939 92 - 27905053 GUAGAAGAAUUCUUACUGUCCCGUCUUAGUUCUCGA--CUCUCUAUUCUUC--AAACUCAUGUUGUACAUUUGUUUUCUUCUACUUUCUUUCUUUU--- ((((((((..............(((.........))--)............--((((..(((.....)))..))))))))))))............--- ( -13.80, z-score = -2.71, R) >droSim1.chr3R 10804560 92 + 27517382 GUAGAAGAAUUCUUCCUGUCCCGUCUUAGUUCUCGA--CUCUCUAUUCUUC--AAACUCAUGUUGUACAUUUGUUUUCUUCUACUUUCUUUCUUUU--- ((((((((..............(((.........))--)............--((((..(((.....)))..))))))))))))............--- ( -13.80, z-score = -3.03, R) >droSec1.super_0 3845745 92 + 21120651 GUAGAAGAAUUCUUCCUGUCCCGUCUUAGUUCUCGA--CUCUCUAUUCUUC--AAACUCAUGUUGUACAUUUGAUUUCUUCUACUUUCUUUCUUUU--- (((((((((.((....(((...(((.........))--)............--.(((....)))..)))...)).)))))))))............--- ( -14.60, z-score = -2.78, R) >droYak2.chr3R 8643246 87 - 28832112 GUAGAAGAAUUCUUCCUAUCCCGUCUUAGUUCUCGA--CUCUCUA-UCCUC--AAACUCAUGUUGUACAUUUGUUUUCUUCUACUUUCUUUU------- ((((((((..............(((.........))--)......-.....--((((..(((.....)))..))))))))))))........------- ( -13.80, z-score = -3.36, R) >droEre2.scaffold_4770 742211 88 + 17746568 GUAGAAGAAUUCUUCCUAUCCCGUCUUAGUUCUCGA--CUCUCUAUUCUUC--AAACUCAUGUUGUACAUUUGUUUUCUUCUACUUUCUUUU------- ((((((((..............(((.........))--)............--((((..(((.....)))..))))))))))))........------- ( -13.80, z-score = -3.33, R) >droVir3.scaffold_13047 2244518 90 + 19223366 -------AUAUAUUUGUAU-UAGACUCAAUUUUCGAUGCUCUCAACUCUCUCAAAACUCAUGUUGUACAUUUGUUUUC-UCUACUUCUUUUCUUUUUUU -------........((((-..((.......))..)))).............(((((..(((.....)))..))))).-.................... ( -5.00, z-score = -0.24, R) >consensus GUAGAAGAAUUCUUCCUAUCCCGUCUUAGUUCUCGA__CUCUCUAUUCUUC__AAACUCAUGUUGUACAUUUGUUUUCUUCUACUUUCUUUCUUUU___ ((((((((.......(((........)))........................((((..(((.....)))..))))))))))))............... ( -6.71 = -8.08 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:09 2011