| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,574,319 – 4,574,410 |
| Length | 91 |
| Max. P | 0.537954 |
| Location | 4,574,319 – 4,574,410 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 79.34 |
| Shannon entropy | 0.40667 |
| G+C content | 0.39998 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -9.72 |
| Energy contribution | -10.69 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4574319 91 - 27905053 UUGAGAUUACAAAACAACGUAAAAAGGUUCAUUCACCUGU----GUGCGUUGUGUCUGUUUCGCGCUUUUACGUGUUUAUGUGUGAGACAAAGUC ....((((.....((((((((...((((......))))..----.))))))))...((((((((((..............)))))))))).)))) ( -27.34, z-score = -2.60, R) >droWil1.scaffold_181089 4573728 95 - 12369635 UUAAGAUUACAAAACAACGCAAAAAGGUUCAUUCACCUGUGCGAGUGCGUUUAUUAUCUAUCAUCACUCAAGGAGUUUAUGCGUUAGCCAAAUUC ..................(((...((((......)))).)))(((((....((.....))....)))))...((((((..((....)).)))))) ( -15.60, z-score = -0.41, R) >droEre2.scaffold_4770 734552 91 + 17746568 UUGCGAUUACAAAACAACGUAAAAAGGUUCAUUCACCUGU----AUGCGUUGUGUCUGUUUCGCGCUUUUACGUGUUUAUGCGUUGGCCAAAGUC ..((((..(((..((((((((...((((......))))..----.))))))))...))).))))(((...((((......)))).)))....... ( -28.50, z-score = -3.00, R) >droYak2.chr3R 8635522 91 - 28832112 UUGCGAUUACAAAACAACGUAAAAAGGUUCAUUCACCUGU----AUGCGUUGUGUCUGUUUCGCGCUUUUACGUGUUUAUGCGUUAGCCAAACUC ..((((..(((..((((((((...((((......))))..----.))))))))...))).))))(((...((((......)))).)))....... ( -28.50, z-score = -3.54, R) >droSec1.super_0 3838118 91 + 21120651 UUGCGAUUACAAAACAACGUAAAAAGGUUCAUUCACCUGU----GUGCGUUGUGUCUGUUUCGCGGUUUUACGUGUUUAUGCGUUAGGCAAAGUC .(((((..(((..((((((((...((((......))))..----.))))))))...))).)))))((((.((((......)))).))))...... ( -29.40, z-score = -3.13, R) >droSim1.chr3R 10796955 91 + 27517382 UUGCGAUUACAAAACAACGUAAAAAGGUUCAUUCACCUGU----GUGCGUUGUGUCUGUUUCGCGGUUUUACGUGUUUAUGCGUUAGACAAAGUC .(((((..(((..((((((((...((((......))))..----.))))))))...))).)))))((((.((((......)))).))))...... ( -29.90, z-score = -3.38, R) >droAna3.scaffold_13340 10982959 80 - 23697760 UUAAGAUUACAAAACACCGCAAAAAAGGUCGUUCACC--UGCAAGUGCGUUUUUCAGCUUUACUCUUUCAGUGAGUUUAUGC------------- .................((((....((((.....)))--).....)))).......((...((((.......))))....))------------- ( -13.20, z-score = 0.08, R) >consensus UUGCGAUUACAAAACAACGUAAAAAGGUUCAUUCACCUGU____GUGCGUUGUGUCUGUUUCGCGCUUUUACGUGUUUAUGCGUUAGCCAAAGUC .............((((((((...((((......)))).......))))))))........((((......)))).................... ( -9.72 = -10.69 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:07 2011