Locus 9161

Sequence ID dm3.chr3R
Location 4,571,043 – 4,571,143
Length 100
Max. P 0.500000
window12563

overview

Window 3

Location 4,571,043 – 4,571,143
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 94.69
Shannon entropy 0.09337
G+C content 0.40966
Mean single sequence MFE -22.68
Consensus MFE -20.12
Energy contribution -21.36
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -1.38
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr3R 4571043 100 - 27905053
GAACUAUGCAUGCACAUCGGGAAAAUAUUUUGUUUCUCCAUUUUAUAUAUUUUUCGCCGGCUUCUUUUUCGUUUCGAGAUGGCAAGGAUCAGGCACACAG
(((..(((.(((...((.((((((........)))))).))..))).)))..)))(((....(((((.(((((....))))).)))))...)))...... ( -16.70, z-score =   0.27, R)
>droSim1.chr3R 10793644 100 + 27517382
GAACUAUGCAUGCACAUUGGGAAAAUAUUUUGUUUCUCCAUUUUAUAUAUUUUUCGCCGGCUUCUUUUUCGUUUCGAGCUGGCGAGGAGCAGGCACACAG
......(((.(((....(((..((((.....))))..)))..........(((((((((((((............)))))))))))))))).)))..... ( -30.50, z-score =  -3.66, R)
>droSec1.super_0 3834784 100 + 21120651
GAACUAUGCAUGCACAUUGGGAAAAUAUUUUGUUUCUCCAUUUUAUAUAUUUUUCGCCGGCUUCUUUUUCGUUUCGAUCUGGCUAGGAGCAGGCACACAG
(((..(((.(((.....(((..((((.....))))..)))...))).)))..)))(((.((((((...(((........)))..)))))).)))...... ( -19.80, z-score =  -0.73, R)
>droYak2.chr3R 8632102 99 - 28832112
GAACUAUGCAUGCACAUUGGGAAAAUAUUUUGUUUCUCCAUUUUAUAUAUUUUUCGCCGGCUUC-UUUUCAUUGCGAGCUGCCGAGGAGCAGGCACACAG
......(((.(((....(((..((((.....))))..)))..........((((((.(((((((-........).)))))).))))))))).)))..... ( -24.10, z-score =  -1.32, R)
>droEre2.scaffold_4770 731110 99 + 17746568
GUACUAUGCAUGCACAUUGGGAAAAUAUUUUGUUUCUCUAUUUUAUAUAUUUUUCGCCGGCUUC-UUUUCAUUUCGAGCUGCCGAGGAGCAGGCACACAG
......(((.(((.....((((((........))))))............((((((.((((((.-..........)))))).))))))))).)))..... ( -22.30, z-score =  -1.45, R)
>consensus
GAACUAUGCAUGCACAUUGGGAAAAUAUUUUGUUUCUCCAUUUUAUAUAUUUUUCGCCGGCUUCUUUUUCGUUUCGAGCUGGCGAGGAGCAGGCACACAG
......(((.(((.....((..((((.....))))..))...........(((((((((((((............)))))))))))))))).)))..... (-20.12 = -21.36 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:06 2011