| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,771,740 – 6,771,831 |
| Length | 91 |
| Max. P | 0.865669 |
| Location | 6,771,740 – 6,771,831 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 57.89 |
| Shannon entropy | 0.85139 |
| G+C content | 0.35030 |
| Mean single sequence MFE | -15.36 |
| Consensus MFE | -5.33 |
| Energy contribution | -5.66 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.729445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6771740 91 + 23011544 -------UUUUAUAUCUCAAUAAUAUCUUUUAGAGCAUAUAUUAAUCCAGCAGCUCUGGCAUAUUUUCCACGCACUAGUUAAGUGCGUAACGAGCCAU -------........(((...........(((((((................)))))))..........(((((((.....)))))))...))).... ( -18.39, z-score = -2.17, R) >droSim1.chr2L 6572177 91 + 22036055 -------UUUUAUAUCUUCAUAAUAUCUUUUACAGCGUAUAUUAAUACAGCAUUUCUGGCAUAUUUUCCACGCACUAGUUACGUGCGUAACGAUCCAU -------......(((.....(((((((......((((((....)))).))......)).)))))....((((((.......))))))...))).... ( -12.20, z-score = -0.99, R) >droSec1.super_3 2310347 95 + 7220098 ---UUUUAUGUUUAUAUUUAUAAUAUCUUUUAGAGCUUAUAUUCAUUCAGCAGUUCUGGCAUAUUUGCCACGCACUAGUUACGUGCGUAACGAUCCAU ---..(((((........)))))........((((((..............))))))((((....))))((((((.......)))))).......... ( -17.74, z-score = -1.55, R) >droYak2.chr2L 16186738 96 - 22324452 UUAGUGUUUUUAAAUCUUCAUAAUUUCUUU--GAACCCAUAUUAGUCCAGCAGAUCUGGCAUAAAUUGCACGCACUAGUUACGUGCGUAGCGAUCCAU ...(((..((((((.............)))--)))..)))....(.((((.....)))))....(((((((((((.......)))))).))))).... ( -19.02, z-score = -1.38, R) >droEre2.scaffold_4929 15687960 88 + 26641161 -------UUUUUUAUCCUCUGAAUUUCAUU--GGAACCAUAUUAGUCGACCAC-UGUGGCACAAUUUGCACGCACUAGUUACGUGCGUAACGGGCCAU -------.......(((..((.....))..--)))..................-.(((((......((((((.........))))))......))))) ( -18.50, z-score = -0.54, R) >dp4.chr4_group1 3876780 69 + 5278887 ---------------------UUUUUGUCUCGUGGACAGUAUUUUAUU-UCAUUUUCAUUUCAUUUUAU-CGCAC------AGUGCUUAACGAUUUAU ---------------------...(((((.....))))).........-....................-.((..------...))............ ( -4.90, z-score = 0.30, R) >apiMel3.GroupUn 21618833 92 + 399230636 -----AUCUACAAUUCUAGAUCAUUUAUGCAGCGCAAUAGAUUGAAUC-CUGUCACUGACAUAUUUUCCACAUGUGUUACAAUUGCGUGAUGAAACAU -----(((((......)))))..(((((...(((((((.(((......-..)))..((((((((.......))))))))..))))))).))))).... ( -16.80, z-score = -0.36, R) >consensus _______UUUUAUAUCUUCAUAAUUUCUUUUAGAGCCUAUAUUAAUCCAGCAGUUCUGGCAUAUUUUCCACGCACUAGUUACGUGCGUAACGAUCCAU .....................................................................((((((.......)))))).......... ( -5.33 = -5.66 + 0.33)
| Location | 6,771,740 – 6,771,831 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 57.89 |
| Shannon entropy | 0.85139 |
| G+C content | 0.35030 |
| Mean single sequence MFE | -17.72 |
| Consensus MFE | -7.29 |
| Energy contribution | -7.64 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6771740 91 - 23011544 AUGGCUCGUUACGCACUUAACUAGUGCGUGGAAAAUAUGCCAGAGCUGCUGGAUUAAUAUAUGCUCUAAAAGAUAUUAUUGAGAUAUAAAA------- ..(((((...(((((((.....)))))))((........)).)))))..........(((((.(((..............))))))))...------- ( -22.04, z-score = -1.82, R) >droSim1.chr2L 6572177 91 - 22036055 AUGGAUCGUUACGCACGUAACUAGUGCGUGGAAAAUAUGCCAGAAAUGCUGUAUUAAUAUACGCUGUAAAAGAUAUUAUGAAGAUAUAAAA------- .(((....((((((((.......))))))))........))).....((.((((....))))))........(((((.....)))))....------- ( -16.20, z-score = -0.35, R) >droSec1.super_3 2310347 95 - 7220098 AUGGAUCGUUACGCACGUAACUAGUGCGUGGCAAAUAUGCCAGAACUGCUGAAUGAAUAUAAGCUCUAAAAGAUAUUAUAAAUAUAAACAUAAAA--- (((..(((((((((((.......))))))((((....))))..........))))).(((((..((.....))..)))))........)))....--- ( -19.00, z-score = -1.60, R) >droYak2.chr2L 16186738 96 + 22324452 AUGGAUCGCUACGCACGUAACUAGUGCGUGCAAUUUAUGCCAGAUCUGCUGGACUAAUAUGGGUUC--AAAGAAAUUAUGAAGAUUUAAAAACACUAA .((((((((.((((((.......))))))))..((((((.....(((..((((((......)))))--).)))...)))))))))))).......... ( -24.50, z-score = -2.43, R) >droEre2.scaffold_4929 15687960 88 - 26641161 AUGGCCCGUUACGCACGUAACUAGUGCGUGCAAAUUGUGCCACA-GUGGUCGACUAAUAUGGUUCC--AAUGAAAUUCAGAGGAUAAAAAA------- .(((((((((((....)))))..(((.(..(.....)..)))).-).)))))...........(((--..((.....))..))).......------- ( -21.20, z-score = -0.57, R) >dp4.chr4_group1 3876780 69 - 5278887 AUAAAUCGUUAAGCACU------GUGCG-AUAAAAUGAAAUGAAAAUGA-AAUAAAAUACUGUCCACGAGACAAAAA--------------------- ....(((((........------..)))-))..................-..........((((.....))))....--------------------- ( -5.70, z-score = -0.24, R) >apiMel3.GroupUn 21618833 92 - 399230636 AUGUUUCAUCACGCAAUUGUAACACAUGUGGAAAAUAUGUCAGUGACAG-GAUUCAAUCUAUUGCGCUGCAUAAAUGAUCUAGAAUUGUAGAU----- ............((((((.((.((....)).....((((.(((((.(((-(((...))))..))))))))))).......)).))))))....----- ( -15.40, z-score = 1.22, R) >consensus AUGGAUCGUUACGCACGUAACUAGUGCGUGGAAAAUAUGCCAGAAAUGCUGAAUUAAUAUAGGCUCUAAAAGAAAUUAUGAAGAUAUAAAA_______ .........(((((((.......))))))).................................................................... ( -7.29 = -7.64 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:57 2011