| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,531,318 – 4,531,417 |
| Length | 99 |
| Max. P | 0.665323 |
| Location | 4,531,318 – 4,531,417 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 94.70 |
| Shannon entropy | 0.10178 |
| G+C content | 0.33838 |
| Mean single sequence MFE | -13.06 |
| Consensus MFE | -11.37 |
| Energy contribution | -11.90 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4531318 99 + 27905053 AAUCAUGAACCAUACAAAAUGAAAAUCCACCCUCGAAAAAA-GUUGCCAACGUUUUUUCCGUACGUUUUUAUUUUGUUUUCCUUGCUUCCCCUUUGUUUU ......(((.((.(((((((((((((..((....(((((((-((.....)).))))))).))..)))))))))))))......)).)))........... ( -13.10, z-score = -1.82, R) >droSim1.chr3R 10754684 99 - 27517382 AAUCAUGAACCAUACAAAAUGAAAAUCCACCCUCGAAAAAA-GUUGCCAACGUUUUUUCCGUUCGUUUUUAUUUUGUUUUCCUUGCUUCCCCUUUGUUUU ......(((.((.(((((((((((((..((....(((((((-((.....)).))))))).))..)))))))))))))......)).)))........... ( -13.10, z-score = -1.81, R) >droSec1.super_0 3798228 99 - 21120651 AAUCAUGAACCAAACAAAAUGAAAAUCCACCCUCGAAAAAA-GUUGCCAACGUUUUUUCCUUUCGUUUUUAUUUUGUUUUCCUUGCUUCCCCUUUGUUUU ...........(((((((((((((((........(((((((-((.....)).))))))).....)))))))))))))))..................... ( -13.32, z-score = -1.88, R) >droYak2.chr3R 8594853 99 + 28832112 AAUCAUGAACCAUACAAAAUGAAAAUCCACCCUCGAAAAAA-GUUGCCAACGUUUUUUCCGUUUGUUUUUAUUUUGUUUUCUUUGCUUCCCCAUUGUUUU ......(((....(((((((((((((..((....(((((((-((.....)).))))))).))..))))))))))))).)))................... ( -13.50, z-score = -1.65, R) >droEre2.scaffold_4770 693346 99 - 17746568 AAUCAUGAACCGUACAAAAUGAAAAUCCACCCUCGAAAAAA-GUUGCCAACGUUUUUUCCGUUCGUUUUUAUUUUGUUUUCUCUGCUUCCCCUUUGUUUU ......(((....(((((((((((((..((....(((((((-((.....)).))))))).))..))))))))))))).)))................... ( -13.20, z-score = -1.59, R) >droAna3.scaffold_13340 10947519 99 + 23697760 AAUCAUGAACCAUACAAAAUGAAAAUCCACCCUCGAAAAAAAGUUGCCAACGAUUUUUUCGUUCGUUUUUAUUUU-CUUUCGCUUCUUCCCCUUUGUUUU ...............((((..((..........(((((.(((((.((.(((((.....))))).))....)))))-.)))))..........))..)))) ( -12.15, z-score = -1.33, R) >consensus AAUCAUGAACCAUACAAAAUGAAAAUCCACCCUCGAAAAAA_GUUGCCAACGUUUUUUCCGUUCGUUUUUAUUUUGUUUUCCUUGCUUCCCCUUUGUUUU ......(((....(((((((((((((..((....(((((((.((.....)).))))))).))..))))))))))))).)))................... (-11.37 = -11.90 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:02 2011