| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,528,961 – 4,529,111 |
| Length | 150 |
| Max. P | 0.691520 |
| Location | 4,528,961 – 4,529,111 |
|---|---|
| Length | 150 |
| Sequences | 9 |
| Columns | 169 |
| Reading direction | reverse |
| Mean pairwise identity | 70.27 |
| Shannon entropy | 0.60900 |
| G+C content | 0.42272 |
| Mean single sequence MFE | -45.64 |
| Consensus MFE | -11.09 |
| Energy contribution | -12.37 |
| Covariance contribution | 1.27 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4528961 150 - 27905053 UAGAAAAAGAAUUACUUAUUCAGCGCUUGACAUGGGCUUUUGGCCCGGCCUAAAAGCCUG---CUCU----------------GCCAUGUUCUGGCCAGCUUGGCAUUGGCGUUGACUGUGCGACUAAUAGGCUCGCAUAUUUAUCGUAAGAAGUUCAAUUUUUUAUUC (((((((.(((((.(((((((((((((.....(((((.....)))))........(((.(---((..----------------((((.....)))).)))..)))...)))))))).(((((((((....)).)))))))......))))).)))))..)))))))... ( -48.80, z-score = -2.38, R) >droEre2.scaffold_4770 690896 149 + 17746568 UAGAAAAAGAAUUACUUAUUCAGCGCUUGACAUGGGCUUUUGGCCUGGCCUAAAAGCAUG---CUG-----------------GCCAUGGUUUAGGCCAGCUUGGAAUGGCGUUGACUGUGCGACUAAUAGGCUCGCAUAUUUAUCGCAAGAAGUUCAAUUUUUUAUUC (((((((.(((((......((((((((...((...(((((((((...))).))))))..(---(((-----------------(((........))))))).))....)))))))).(((((((((....)).)))))))....((....)))))))..)))))))... ( -50.30, z-score = -2.76, R) >droYak2.chr3R 8592414 165 - 28832112 UAGAAAAAGAAUUACUUAUUCAGCGCUUGACAUAGGCUUUUGGCCUGGCCUAAAAGCCUG---CUGUCCAUGUUCUGACCAUGGUUCUGUUCUGGCCAGCUUGGCA-UGGCGUUGACUGUGCGAGUAAUAGGCUCGCAUAUUUAUCGUAAGAAGUUCAAUUUUUUAUUC (((((((.(((((.((((((((((((..((((((((((((((((...))).)))))))))---.))))(((((((((.(((.((......))))).)))...))))-))))))))).(((((((((.....)))))))))......))))).)))))..)))))))... ( -60.60, z-score = -4.44, R) >droSec1.super_0 3795796 149 + 21120651 UAGAAAAAGAAUUACUUAUUCAGCGCUUGUCAUGGGCUUUUGGACCGGCUUAAAAGCCUG---CUG-----------------GCCAUGUCCUAGCCAGCUUGGCAUUGGCGUUGACUGUGCGACUAAUAGGCUCGCAUAUUUAUCGUAAGAAGUUCAAUUUUUUAUUC (((((((.(((((.((((((((((((((((((.((((((((((......))))))))))(---(((-----------------((.........)))))).)))))..)))))))).(((((((((....)).)))))))......))))).)))))..)))))))... ( -52.80, z-score = -3.73, R) >droSim1.chr3R 10752247 149 + 27517382 UAGAAAAAGAAUUACUUAUUCAGCGCUUGACAUGGGCUUUUGGCCCGGCCUAAAAGCCUG---CUG-----------------GCCAUGUCCUAGCCAGCUUGGCAUUGGCGUUGACUGUGCGACUAAUAGGCUCGCAUAUUUAUCGUAAGAAGUUCAAUUUUUUAUUC (((((((.(((((.(((((((((((((.....(((((.....)))))........(((.(---(((-----------------((.........))))))..)))...)))))))).(((((((((....)).)))))))......))))).)))))..)))))))... ( -51.70, z-score = -3.11, R) >dp4.chr2 27182182 169 - 30794189 GAGAGAAAGAAUUACUUAUUCAACAUUUGACAUGGGCUUCGGCUUUGGGACGUGGACUUGGGCCUGGGCCUAAAAGCAUUCUGGCCAUGUUUUGGUUGAGAUUCGUUUGCCGUUGUCUGUGCGACUAAUAGGCUCGCAUAUUUAUCGUAAGAAGUUCAAUUUUUUAUUC ((((((..(((((.((((((((((....(((((((((....)).(..(((.((....((((((....))))))..)).)))..))))))))...)))))(((..((.(((....((((((.......))))))..))).))..)))))))).)))))..)))))).... ( -51.00, z-score = -1.92, R) >droPer1.super_6 2473146 169 - 6141320 GAGAGAAAGAAUUACUUAUUCAACAUUUGACAUGGGCUUCGGCUUUGGGACGUGGACUUGGGCCUGGGCCUAAAAGCAUUCUGGCCAUGUUUUGGUUGAGAUUCGUUUGCCGUUGUCUGUGCGACUAAUAGGCUCGCAUAUUUAUCGUAAGAAGUUCAAUUUUUUAUUC ((((((..(((((.((((((((((....(((((((((....)).(..(((.((....((((((....))))))..)).)))..))))))))...)))))(((..((.(((....((((((.......))))))..))).))..)))))))).)))))..)))))).... ( -51.00, z-score = -1.92, R) >droWil1.scaffold_181089 4533554 133 - 12369635 UCUAGAAUUAUUUAGUUAUUCAACAUUUAACAUAGGCUUUGCCUUUGGC-UAAAAGCCU----------------------U-----UCUUCUCAUUCUCU------CUUCGUUAACUGUAU--CUAAUAGGCUCGCAUAUUUCUGCUAAGCAUUUCAAUUUUUUAUUC .(((((((.........)))).(((.(((((..((((...))))..(((-.....))).----------------------.-----..............------....))))).)))..--....)))(((.(((......)))..)))................. ( -18.50, z-score = -0.73, R) >droGri2.scaffold_14906 10670654 140 + 14172833 ---------CAUACCUAAUUCAGCUUUUGGCAU-GCCUCUUGCCUUGGCAU-CCGUCUAAAAGCCGC----------------CCACCCUCCUCCCUCACACGUUGCGUUCGUUGACUGAGU--CUAAUAGGCUCGUAUACUUUUCGUAAGCAGUUCAAUUUUUUAUUC ---------.............(((((((((((-(((.........)))))-..).)))))))).((----------------(.......(((..(((.(((.......))))))..))).--......)))..((.(((.....))).))................. ( -26.04, z-score = -0.73, R) >consensus UAGAAAAAGAAUUACUUAUUCAGCGCUUGACAUGGGCUUUUGGCCUGGCCUAAAAGCCUG___CUG_________________GCCAUGUUCUGGCCAACUUGGCAUUGGCGUUGACUGUGCGACUAAUAGGCUCGCAUAUUUAUCGUAAGAAGUUCAAUUUUUUAUUC ........(((((.((((((((((.........(((.......)))((........)).....................................................))))).(((((((((....)).)))))))......))))).)))))............ (-11.09 = -12.37 + 1.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:59:01 2011