| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,524,210 – 4,524,317 |
| Length | 107 |
| Max. P | 0.506597 |
| Location | 4,524,210 – 4,524,317 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 90.28 |
| Shannon entropy | 0.16914 |
| G+C content | 0.35327 |
| Mean single sequence MFE | -23.76 |
| Consensus MFE | -18.32 |
| Energy contribution | -18.76 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4524210 107 + 27905053 CCACAAUUAGCAUUCGAAAUUCCAAAUCUCCUUAAGGUAGUUUGUGCAUAUUGGGUGUAUUCCACCUUUUUAAGCUAAUUUCGGAAAAUGUAUCAUUGUUAGCUUGA ...((((((((.(((((((((.(((((..((....))..))))).((.((..(((((.....)))))...)).)).))))))))).((((...))))))))).))). ( -22.90, z-score = -1.64, R) >droEre2.scaffold_4770 685097 107 - 17746568 GCACAAUUAGCAUCCGAAAUUCAAAAUCUUCCCUAGGUAGUUUGUGAAUAAUAGGUGUAUACCACCUUUUUAAACUUAUUUGCGAAAAGGUAUCUUUGUUAGCUUGA ...(((((((((.((..........((((.....))))..((((..(((((.(((((.....)))))........)))))..))))..))......)))))).))). ( -17.80, z-score = -0.09, R) >droYak2.chr3R 8587322 107 + 28832112 GCACAAUUAGCAUCCGAAAUUCAAAAUCUCCCUUAGGUAGUUUGUGCAUAAUGGGUGUAUUUCGCCUUUUUAAGCUUAUUUCGGUAAAUGUAUCUUUGUUGGCUUGA ((.((((..(((((((((((...((((..((....))..))))..((.(((.(((((.....)))))..))).))..)))))))...))))......)))))).... ( -21.60, z-score = -0.59, R) >droSec1.super_0 3791084 107 - 21120651 CCACAAUUAGCAUCCGAAAUUCCAAAUCUCCUUAAGGAAGUUUGUGCAUAAUGGGUGUAUUCCACCUUUUUAAGCUAAUUUCGGAAAAUGUAUCAUUGCUAGCUUGA ...((((((((.(((((((((.((((..(((....)))..)))).((.(((.(((((.....)))))..))).)).))))))))).((((...))))))))).))). ( -30.20, z-score = -3.77, R) >droSim1.chr3R_random 299388 107 + 1307089 CCACAAUUAGCAUCCGAAAUUCCAAAUCUCCUUAAGGUAGUUUGUGCAUAAUGGGUGUAUUCCACCUUUUUAAGCUAAUUUCGGAAAAUGUAUCAUUGUUAGCUUGA ...((((((((.(((((((((.(((((..((....))..))))).((.(((.(((((.....)))))..))).)).))))))))).((((...))))))))).))). ( -26.30, z-score = -2.74, R) >consensus CCACAAUUAGCAUCCGAAAUUCCAAAUCUCCUUAAGGUAGUUUGUGCAUAAUGGGUGUAUUCCACCUUUUUAAGCUAAUUUCGGAAAAUGUAUCAUUGUUAGCUUGA ...(((((((((((((((((..(((((..((....))..))))).((.(((.(((((.....)))))..))).))..))))))))...........)))))).))). (-18.32 = -18.76 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:59 2011