| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,524,068 – 4,524,165 |
| Length | 97 |
| Max. P | 0.719144 |
| Location | 4,524,068 – 4,524,165 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 84.86 |
| Shannon entropy | 0.26987 |
| G+C content | 0.46023 |
| Mean single sequence MFE | -30.25 |
| Consensus MFE | -19.30 |
| Energy contribution | -20.00 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4524068 97 + 27905053 -----------UUGGGCAACUUUAAGCCCAGACACAUUAACAACUUAGCCAACUGCAAUUGGGACGAUGGAA-GUUUGGGCCGAGGAGAUUCCUUGUUGCUUUAACACA -----------..(((((((.....((((((((.((((..(((.((.((.....)))))))....))))...-)))))))).((((.....)))))))))))....... ( -26.90, z-score = -1.71, R) >droAna3.scaffold_13340 10941747 106 + 23697760 UCGGGCUCCUGUGCUGGAACUUUAAGCCCAGACACAUUAGCAAGUUAGUUGUCUGUAAUUCGGGCCAACUGA---UUUGACCGGGGAGAUUUCCUGUUGCUUUAACAGA (((((((..((((((((..........)))).))))..)))((((((((((((((.....)))).)))))))---)))..)))).........((((((...)))))). ( -34.30, z-score = -1.73, R) >droEre2.scaffold_4770 684954 98 - 17746568 -----------UUGGGCAACUUUAAGCCCAGACACAUUAACAACUUAGCCAACUGCAAUUUGGCCGAAUGGAAGUUUGGGCCGAGGAGAUUCCUUGUUGCUUUAACACA -----------..(((((((.....((((((((.((((.........(((((.......)))))..))))...)))))))).((((.....)))))))))))....... ( -29.80, z-score = -2.30, R) >droYak2.chr3R 8587179 98 + 28832112 -----------UUGGGCAACUUUAAGCCCAGACACAUUAACAACUUAGCCAACUGCAAUUUGGCCGAUGGAAAGUUUGGGCCGAGGAGAUUCCUUGUUGCUUUAACACA -----------..(((((((.....((((((((...((..((..(..(((((.......)))))..)))..)))))))))).((((.....)))))))))))....... ( -28.80, z-score = -1.98, R) >droSec1.super_0 3790942 97 - 21120651 -----------UUGGGCAACUUUAAGCCCAGACACAUUAACAACUUAGCCAACUGCAAUUUGGCCGAUGGAG-GUUUGGGCCGAGGAGACUUCUUGUUGCUUUAACACA -----------..(((((((.....((((((((.((((.........(((((.......))))).))))...-)))))))).(((....)))...)))))))....... ( -29.70, z-score = -2.21, R) >droSim1.chr3R_random 299246 97 + 1307089 -----------UUGGGCAACUUUAAGCCCAGACACAUUAACAACUUAGCCAACUGCAAUUUGGCCGAUGGAG-GUUUGGGCCGAGGAGACUCCUUGUUGCUUUAACACA -----------..(((((((.....((((((((.((((.........(((((.......))))).))))...-)))))))).(((....)))...)))))))....... ( -32.00, z-score = -2.72, R) >consensus ___________UUGGGCAACUUUAAGCCCAGACACAUUAACAACUUAGCCAACUGCAAUUUGGCCGAUGGAA_GUUUGGGCCGAGGAGAUUCCUUGUUGCUUUAACACA .............(((((((.....((((((((....(((....)))(((((.......))))).........)))))))).((((.....)))))))))))....... (-19.30 = -20.00 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:58 2011