| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,521,764 – 4,521,866 |
| Length | 102 |
| Max. P | 0.509589 |
| Location | 4,521,764 – 4,521,866 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.49 |
| Shannon entropy | 0.52655 |
| G+C content | 0.32073 |
| Mean single sequence MFE | -21.37 |
| Consensus MFE | -7.03 |
| Energy contribution | -8.91 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4521764 102 + 27905053 GAAGUGAUUCAAUGUCAUUUGCGGUUUAUA--AAUAUAUCCCGUAUAAUAUGUGCAUAUUUAUUUUUAUGCGCCUAACAAAGCCCCAUUUGUUUGAAAUGCGCU .(((((((.....)))))))((((..(((.--...)))..))((((.....(((((((........)))))))(.((((((......)))))).)..)))))). ( -23.00, z-score = -2.13, R) >droSim1.chrU 76236 102 + 15797150 GAAGUGAUUCAAUGUCAUUUGCGGUUUAUA--AAUAUAUCCCGUAUAAUAUGUGCAUAUUUAUUUUUAUGCGCCUAACAAAGCCCCAUUUGUUUGAAUUGCGCU ...(..(((((........(((((..(((.--...)))..)))))......(((((((........)))))))..((((((......)))))))))))..)... ( -25.40, z-score = -2.99, R) >droSec1.super_0 3788611 102 - 21120651 GAAGUGAUUCAAUGUCAUUUGCGGUUUAUA--AAUAUAUCCCGUAUAAUAUGUGCAUAUUUAUUUUUAUGCUCCUAACAAAGCCCCAUUUGUUUGAAUUGCGCU ...(..((((((...((..((.(((((...--.((((((........))))))(((((........)))))........))))).))..)).))))))..)... ( -23.10, z-score = -2.78, R) >droYak2.chr3R 8584848 102 + 28832112 GAAGUGAUUCAAUGUCAUUUGGGGUUUAUA--AAUAUAUCCCGUAUAAUAUGUGCAUAUUUAUUUUUAUGCGCCUAACAAAGCCCCAUUUGUUUGAUUUGCGCU ...(..(.((((...((..((((((((...--..(((((...)))))....(((((((........)))))))......))))))))..)).)))).)..)... ( -29.00, z-score = -3.55, R) >droEre2.scaffold_4770 682593 102 - 17746568 GAAGUGAUUCAAUGUCAUUUGGGGUUUAUA--AAUAUAUCCCGUAUAAUAUGUGCAUAUUUAUUUUUAUGCGCCUAACAAAGCCCCAUUUGUUUGAUUUGCGCU ...(..(.((((...((..((((((((...--..(((((...)))))....(((((((........)))))))......))))))))..)).)))).)..)... ( -29.00, z-score = -3.55, R) >droAna3.scaffold_13340 10939648 85 + 23697760 GAACUCAUUCAAUGUCAUUUG-GGUUUAUA--AAUAAAUGCCAUAUAAUAUAGAGAUUUUUAUUUUUAUGCGCCUAACAAAGCCUCAU---------------- (((((((............))-)))))...--.......((((((....(((((....)))))...)))).))...............---------------- ( -8.70, z-score = 0.88, R) >droWil1.scaffold_181089 4526173 85 + 12369635 -----------------AAAAGGGUCCACACCAAUAGGACAUCUCUGUUCUGUUUAAUUUUAGUUUUGAUCAUCUUUCAAUGCCAUUUGUUUCAAAAAUAAA-- -----------------.....(((....)))(((((((((....)))))))))....((((.((((((.((...............))..)))))).))))-- ( -11.36, z-score = 0.02, R) >consensus GAAGUGAUUCAAUGUCAUUUGCGGUUUAUA__AAUAUAUCCCGUAUAAUAUGUGCAUAUUUAUUUUUAUGCGCCUAACAAAGCCCCAUUUGUUUGAAUUGCGCU .(((((((.....)))))))..(((((......((((((........))))))(((((........)))))........))))).................... ( -7.03 = -8.91 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:57 2011