| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,520,036 – 4,520,134 |
| Length | 98 |
| Max. P | 0.998590 |
| Location | 4,520,036 – 4,520,134 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.04 |
| Shannon entropy | 0.26499 |
| G+C content | 0.54062 |
| Mean single sequence MFE | -40.90 |
| Consensus MFE | -32.48 |
| Energy contribution | -33.16 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.16 |
| Mean z-score | -3.69 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.41 |
| SVM RNA-class probability | 0.998590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4520036 98 - 27905053 CAAAAUCACUCAAAUCGCCUUCAGGGGGUGGGUGCCGCCCAGCCACCCCUGACGUAUUUUUUGUUAGGGGUGGUGCCGCAAGCACACCAAAAAAAGAG ........(((..(((.((....)).)))((((((.((...(((((((((((((.......)))))))))))))...))..)))).)).......))) ( -41.70, z-score = -3.74, R) >droEre2.scaffold_4770 680780 83 + 17746568 CAAAAUCACUCAAAUCGAGUUCGGGGGUUGGGUG---CCCAGCCACCCCUGGCAUAUUUUUUGUUAGGGGUGGUGCCGCAAGCACA------------ .......((((.....)))).(((((((.....)---))).(((((((((((((.......))))))))))))).)))........------------ ( -35.50, z-score = -2.93, R) >droYak2.chr3R 8582985 83 - 28832112 CAAAAUCACUCAAAUCCCCUUCAGAGGGUGGGUG---CCCAACCACCCCUGGCAUAUUUUUUGUUAGGGGUGGUGUGGCAAGCACA------------ .......(((((....((((....)))))))))(---((..(((((((((((((.......)))))))))))))..))).......------------ ( -37.40, z-score = -3.31, R) >droSec1.super_0 3786875 98 + 21120651 CAAAAUCACUCAAAUCCCCGUCAGGGGGUGGGUGCCGCCUAGCCACCCCUGGCGUAUUUUUUGUUAGGGGUGGUGCCGCAAGCACACCAAAAAAAGAG ........(((..((((((....))))))((((((.((...(((((((((((((.......)))))))))))))...))..)))).)).......))) ( -46.60, z-score = -4.82, R) >droSim1.chr3R_random 290401 98 - 1307089 CAAAAUCACUCAAAUUCCCGUCAGGGGGUGGGUGCCGCCCAGCCACCCCUGGCGUAUUUUUUGUUAGGGGUGGUGCCGCAAGCACACCAAAAAAAGUG ......((((...((((((....))))))((((((.((...(((((((((((((.......)))))))))))))...))..)))).))......)))) ( -43.30, z-score = -3.66, R) >consensus CAAAAUCACUCAAAUCCCCUUCAGGGGGUGGGUGCCGCCCAGCCACCCCUGGCGUAUUUUUUGUUAGGGGUGGUGCCGCAAGCACACCAAAAAAAG_G ......((((((...((((....)))).))))))..((...(((((((((((((.......)))))))))))))...))................... (-32.48 = -33.16 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:56 2011