| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,495,969 – 4,496,023 |
| Length | 54 |
| Max. P | 0.527197 |
| Location | 4,495,969 – 4,496,023 |
|---|---|
| Length | 54 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 74.87 |
| Shannon entropy | 0.49595 |
| G+C content | 0.40856 |
| Mean single sequence MFE | -9.30 |
| Consensus MFE | -5.52 |
| Energy contribution | -5.73 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4495969 54 - 27905053 ACAAAUUCGCAAAUUCACUAAAGCUACUGGACAACACGUGGGUUGGCAACUGAA---- ........((.(((((((...................))))))).)).......---- ( -7.11, z-score = 0.20, R) >droSim1.chr3R 10728398 54 + 27517382 CCAAAUUCGCAAAUUCACUAAAGCUACUGGACAACACGUGGCUUGGCAACUAAA---- ........((..........(((((((((.....)).))))))).)).......---- ( -10.20, z-score = -1.71, R) >droSec1.super_0 3763120 54 + 21120651 ACAAAUUCGCAAAUUCACUAAAGCUACUGGAAAACACGUGGCUUGGAAACUGAA---- .........((..(((....(((((((((.....)).))))))).)))..))..---- ( -11.20, z-score = -2.68, R) >droYak2.chr3R 8558859 54 - 28832112 ACAAAUUCGCGAAUUCACUAAAGCUAUUGGACAACACGUGGCUUGGCAGCUGAA---- .............((((((.(((((((((.....)).)))))))...)).))))---- ( -9.30, z-score = -0.07, R) >droEre2.scaffold_4770 656360 53 + 17746568 ACAAAUUCGCGAAUUCACUAAAGCUACUGGACAGCACGUGG-UUGGCAACUGAG---- ........((.(((.(((....(((.......)))..))))-)).)).......---- ( -7.60, z-score = 0.70, R) >droAna3.scaffold_13340 14850434 54 - 23697760 AAAAAUUAGCAAAUUGGCGAAAGCCACUGGAAAACACGUGGCUUGGCAACAGAG---- ................((..(((((((((.....)).))))))).)).......---- ( -14.70, z-score = -2.53, R) >apiMel3.Group11 10495236 58 + 12576330 ACAACUUCUCAACUUACGAUUAAUUACUCGAUCAAUUGUGAUAUUGUUAAAAACAUUU ((((..((.(((....(((........))).....))).))..))))........... ( -5.00, z-score = -0.58, R) >consensus ACAAAUUCGCAAAUUCACUAAAGCUACUGGACAACACGUGGCUUGGCAACUGAA____ ....................(((((((((.....)).))))))).............. ( -5.52 = -5.73 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:54 2011