| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,490,196 – 4,490,249 |
| Length | 53 |
| Max. P | 0.733489 |
| Location | 4,490,196 – 4,490,249 |
|---|---|
| Length | 53 |
| Sequences | 7 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 85.98 |
| Shannon entropy | 0.28581 |
| G+C content | 0.63811 |
| Mean single sequence MFE | -19.96 |
| Consensus MFE | -18.34 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.733489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4490196 53 - 27905053 CGUGGGCGAGGGAGCGGGUGUUACGGGCUCCUCCUUGUCGCCCAUUGCUACAC .(((((((((((((.((((.......)))))))))..))))))))........ ( -24.30, z-score = -2.11, R) >droWil1.scaffold_181130 7896603 50 + 16660200 CGUUGGCGAAGGUGCUGGCGUAGUUGGCUCCUCCUUAUCACCCAUUGCAC--- .((.((.(((((.((..((...))..)).))).....)).))....))..--- ( -11.70, z-score = 0.56, R) >droAna3.scaffold_13340 14845690 53 - 23697760 CGUCGGCGAGGGUGCGGGUGUGGUGGGCUCCUCCUUAUCGCCCAUGGUUAUAU (((.((((((((.(.((((.......))))).)))..))))).)))....... ( -16.40, z-score = 0.51, R) >droEre2.scaffold_4770 650433 53 + 17746568 CGUGGGCGAGGGAGCGGGUGUUACGGGCUCCUCCUUGUCGCCCAUUGCUACAC .(((((((((((((.((((.......)))))))))..))))))))........ ( -24.30, z-score = -2.11, R) >droYak2.chr3R 8553057 53 - 28832112 CGUGGGCGAGGGAGCGGGUGUUACGGGCUCCUCCUUGUCGACCAUUGCUACAC .((((.((((((((.((((.......)))))))))..))).))))........ ( -17.20, z-score = 0.01, R) >droSec1.super_0 3757378 53 + 21120651 CGUGGGCGAGGGAGCGGGUGUUACGGGCUUCUCCUUGUCGCCCAUUGCUACAC .(((((((((((((.((((.......)))))))))..))))))))........ ( -21.50, z-score = -1.55, R) >droSim1.chr3R 10722638 53 + 27517382 CGUGGGCGAGGGAGCGGGUGUUACGGGCUCCUCCUUGUCGCCCAUUGCUACAC .(((((((((((((.((((.......)))))))))..))))))))........ ( -24.30, z-score = -2.11, R) >consensus CGUGGGCGAGGGAGCGGGUGUUACGGGCUCCUCCUUGUCGCCCAUUGCUACAC .(((((((((((((.((((.......)))))))))..))))))))........ (-18.34 = -19.00 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:53 2011