| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,485,304 – 4,485,377 |
| Length | 73 |
| Max. P | 0.676709 |
| Location | 4,485,304 – 4,485,377 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 93.27 |
| Shannon entropy | 0.11221 |
| G+C content | 0.45608 |
| Mean single sequence MFE | -14.19 |
| Consensus MFE | -13.13 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.676709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4485304 73 + 27905053 GCGGCACUGCUCGCACACAC----GACACACUCAACGUGAGAGGCCGAAUGGAAACUUUCAUAUGUAUAUAUUAUAC ..(((.((.(((((......----............))))))))))(((.(....).)))................. ( -15.67, z-score = -1.56, R) >droEre2.scaffold_4770 645439 77 - 17746568 GCGGCACUGCUCACACACACAUACGACACACUCAGCAUGAGAGGCCGAAUGGAAACUUUCAUAUGUAUAUAAUAUAC ..(((.((.((((..(..................)..)))))))))(((.(....).)))................. ( -12.27, z-score = -0.81, R) >droYak2.chr3R 8548168 77 + 28832112 GCGGCACUGCUCACACACACACACGACACACUCAGCAUGAGAGGCCGAAUGAAAACUUUCAUAUGUAUAUAAUAUAC .((((.((.((((..(..................)..)))))))))).(((((....)))))............... ( -11.67, z-score = -0.94, R) >droSec1.super_0 3752375 73 - 21120651 GCGGCACUGCUCGCACACAC----GACACACUCAACGUGAGAGGCCGAAUGGAAACUUUCAUAUGUAUAUAAUAUAC ..(((.((.(((((......----............))))))))))(((.(....).)))................. ( -15.67, z-score = -1.58, R) >droSim1.chr3R 10717666 73 - 27517382 GCGGCACUGCUCGCACACAC----GACACACUCAACGUGAGAGGCCGAAUGGAAACUUUCAUAUGUAUAUAAUAUAC ..(((.((.(((((......----............))))))))))(((.(....).)))................. ( -15.67, z-score = -1.58, R) >consensus GCGGCACUGCUCGCACACAC____GACACACUCAACGUGAGAGGCCGAAUGGAAACUUUCAUAUGUAUAUAAUAUAC .((((.((.(((((......................))))))))))).(((((....)))))............... (-13.13 = -13.13 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:52 2011