| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,479,848 – 4,479,938 |
| Length | 90 |
| Max. P | 0.549915 |
| Location | 4,479,848 – 4,479,938 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 89.88 |
| Shannon entropy | 0.17373 |
| G+C content | 0.43911 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -16.00 |
| Energy contribution | -17.52 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4479848 90 + 27905053 GUUGACAGUCUGAAAUUGACACAGCUGAGAUCCGCGAAUACAACUGGGAGUGCACUGAAAAUUUCCGCCGGACUGCCGAAAAUAAUAAUA .(((.((((((((((((....(((.((...(((.((........)))))...)))))..))))))....)))))).)))........... ( -18.90, z-score = -0.95, R) >droSim1.chr3R 10712190 88 - 27517382 GUUGGCAGUCUGAAAUUGACA--GCUGAGAACCGCGAAUACAACUGGGAGUGCACUGAAAAUUUCCGACGGACUGCCGAAAAUAAUAAUA .(((((((((((.........--((........)).........(((((((.........))))))).)))))))))))........... ( -25.20, z-score = -3.47, R) >droSec1.super_0 3746898 90 - 21120651 GUUGGCAGUCUGAAAUUGACACAGCUGAGAACCGCGAAUACAACUGGGAGUGCACUGAAAAUUUCCGACGGACUGCCGAAAAUAAUAAUA .(((((((((((...........((........)).........(((((((.........))))))).)))))))))))........... ( -25.20, z-score = -3.28, R) >droYak2.chr3R 8542735 89 + 28832112 GUUGGGAGUCUGAAAUUGACACAGCUGAGAUCCGCGAAUACAACAGAGAGUGCACUGAAAAUUCCCGUCAGACCGCCAAAA-UAAUAAUA .((((..((((((..........((.(....).))((((....(((........)))...))))...))))))..))))..-........ ( -16.20, z-score = -0.38, R) >droEre2.scaffold_4770 639891 87 - 17746568 GUUAGGAGUCUGAAAUUGACACAGCUGAGAUCCGCGAAUACAACAGA--CUGCACUGAAAAUUCCCGACAGAUCGCCGAAA-UAAUAAUA .(((((((((((...(((.....((.(....).)).....)))))))--)).).))))...(((.(((....)))..))).-........ ( -12.00, z-score = 0.28, R) >consensus GUUGGCAGUCUGAAAUUGACACAGCUGAGAUCCGCGAAUACAACUGGGAGUGCACUGAAAAUUUCCGACGGACUGCCGAAAAUAAUAAUA .(((((((((((...........((........))..........((((((.........))))))..)))))))))))........... (-16.00 = -17.52 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:50 2011