| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,462,444 – 4,462,543 |
| Length | 99 |
| Max. P | 0.691831 |
| Location | 4,462,444 – 4,462,543 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 96.57 |
| Shannon entropy | 0.05859 |
| G+C content | 0.44646 |
| Mean single sequence MFE | -20.15 |
| Consensus MFE | -18.52 |
| Energy contribution | -18.32 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4462444 99 - 27905053 CUUUUUGCCACCUGCAAGGUGUGCAAAGUUCACUUGGCAAUUAGCAUUUUCUAUGAGCCAUUUCACCCGUUUCCUUUCUUGAUUCCCCAAUGUCGAUUC ..((((((((((.....)))).))))))......((((...(((......)))...))))..................(((((........)))))... ( -18.90, z-score = -1.11, R) >droSim1.chr3R 10694303 99 + 27517382 CUUUUUGCCACCUGCAAGGUGUGCAAAGUUCACUUGGCAAUUAGCAUUUUCUAUGAGCCAUUUCACCCGUUUCCUUUCUCGAUUCCCCAAUGUCGAUUC ..((((((((((.....)))).))))))......((((...(((......)))...))))..................(((((........)))))... ( -21.00, z-score = -2.03, R) >droSec1.super_0 3729415 99 + 21120651 CUUUUUGCCACCUGCAAGGUGUGCAAAGUUCACUUGGCAAUUAGCAUUUUCUAUGAGCCAUUUCACCCGUUUCCUUUCUCGAUUCCCCAAUGUCGAUUC ..((((((((((.....)))).))))))......((((...(((......)))...))))..................(((((........)))))... ( -21.00, z-score = -2.03, R) >droYak2.chr3R 8525185 99 - 28832112 GUUUUUGCCACCUGCAAGGUGUGCAAAGUUCACUCGGCAAUUAGCAUUUUCUAUGAGCCAUUUCACCCGUUUCCUUUCUUGAUUCCUCAAUGCCGAUUC ..((((((((((.....)))).)))))).....((((((..(((......)))((((.....(((..............)))...)))).))))))... ( -21.74, z-score = -1.97, R) >droEre2.scaffold_4770 621739 99 + 17746568 GUUUUUGCCACCUGCAAGGUGUGCGAAGUUCACUCGGCAAUUAGCAUUUUCUAUGAGCCAUUUCACCCGUUUCCUUUCUUGAUUCCCCAAUGUCGACUC ..((((((((((.....)))).)))))).......(((...(((......)))...)))...................(((((........)))))... ( -18.10, z-score = -0.50, R) >consensus CUUUUUGCCACCUGCAAGGUGUGCAAAGUUCACUUGGCAAUUAGCAUUUUCUAUGAGCCAUUUCACCCGUUUCCUUUCUUGAUUCCCCAAUGUCGAUUC ..((((((((((.....)))).)))))).......(((...(((......)))...)))...................(((((........)))))... (-18.52 = -18.32 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:49 2011