| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,392,743 – 4,392,814 |
| Length | 71 |
| Max. P | 0.907672 |
| Location | 4,392,743 – 4,392,814 |
|---|---|
| Length | 71 |
| Sequences | 4 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 88.26 |
| Shannon entropy | 0.18907 |
| G+C content | 0.36620 |
| Mean single sequence MFE | -13.16 |
| Consensus MFE | -11.49 |
| Energy contribution | -12.92 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4392743 71 - 27905053 CUGUCAUAGUCUUCGUUAUUUUCGUACGAAGGUGCAAUAAUUUGUUCCUUAUUGGACUUUUGUACACUCUG .......................((((((((((.((((((........)))))).))))))))))...... ( -18.20, z-score = -3.80, R) >droEre2.scaffold_4770 564067 71 + 17746568 CUGUCAUAAUCUUCGUUAUUUUCGCCCGAAGUUGCAAUACUUUUUUCAUUAUUGAACUUUUGUGCACUCUU .......................(((.((((((.(((((..........))))))))))).).))...... ( -8.90, z-score = -1.40, R) >droSec1.super_0 3673318 71 + 21120651 CUGUCAUAGUCUUCGUUAUUUUCGUACGAAGGUGCAACCAUUUGUUUCUUAUUGGACUUUUGUACACUCUG .......................((((((((((.(((..............))).))))))))))...... ( -13.44, z-score = -1.57, R) >droSim1.chr3R 10635917 71 + 27517382 CUGUCAUAGUCUUCGUUAUUUUCGUACGAAGAUGCAGCCAUAUGUUUCUUAUUGGACUUUUGUACACUCUG ((((....((((((((.........))))))))))))(((.(((.....))))))................ ( -12.10, z-score = -0.73, R) >consensus CUGUCAUAGUCUUCGUUAUUUUCGUACGAAGGUGCAACAAUUUGUUCCUUAUUGGACUUUUGUACACUCUG .......................((((((((((.((((((........)))))).))))))))))...... (-11.49 = -12.92 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:45 2011