| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,383,129 – 4,383,222 |
| Length | 93 |
| Max. P | 0.774440 |
| Location | 4,383,129 – 4,383,222 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 63.37 |
| Shannon entropy | 0.67713 |
| G+C content | 0.42264 |
| Mean single sequence MFE | -18.13 |
| Consensus MFE | -9.73 |
| Energy contribution | -8.51 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.58 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4383129 93 + 27905053 UUAGGACGACUUUGUUGUUACUCCUUUUCAAAAAUUGUGCGGCUGGCUCGAGCCUUUCGCCAUAUUUUCCCAUUAUUUUUUGUUGGCCAAAAG--- ...((.((((((((..(........)..))))...((.((((..(((....)))..))))))...................)))).)).....--- ( -16.90, z-score = 0.10, R) >droPer1.super_3 6130242 81 + 7375914 --------------UUAAGCACAAUCCCUACAACCUCUGCAGCACCACCAUUGUGGCUGCGUUCUUUUCCUGUUUUUUUUUUU-CGGCGGUAACUG --------------..................(((...(((((..(((....)))))))).........(((...........-))).)))..... ( -11.40, z-score = 0.62, R) >dp4.chr2 23357722 82 + 30794189 --------------UUAAGCACAAUCCCUACAACCUCUGCAGCACCACCAUUGUGGCUGCGUUCUUUUCCUGUUUUUUUUUUUUCGGCGGUAACUG --------------..................(((...(((((..(((....)))))))).........(((............))).)))..... ( -11.30, z-score = 0.63, R) >droEre2.scaffold_4770 554549 93 - 17746568 UUAGGACGACGCUGUUGUUAUUCCUUUUCGAAAAUUUUGCGGCUGGCGCGAGCUUUUCGCCAUAUUUUCCUAUUAUUUUUGGUUGGCCAAAAG--- .(((((((((...))))))..........((((((...((((..(((....)))..))))...)))))))))....((((((....)))))).--- ( -24.80, z-score = -1.46, R) >droYak2.chr3R 8457023 93 + 28832112 UUAAGACGACUUUGUUGUUAUUCCUUUUUGAAAAUUUUGCGGCUGGCGCGAGCUUUUCGCCAUAUUUUCCUAUUAUUUUUUGUUGGCCAAAAG--- ....((((((...))))))..........((((((...((((..(((....)))..))))...))))))........(((((.....))))).--- ( -19.20, z-score = -1.00, R) >droSec1.super_0 3663752 82 - 21120651 UGAGGACGACUUUGUUGUUACUCCUUUUCGAAAAUUGUGCGGCUGGCGCGAGCUUUUCGCCAUAUUUUCCCAUUAUUUUUUG-------------- .(((((((((...)))))).)))......((((((((.((((..(((....)))..)))))).)))))).............-------------- ( -22.00, z-score = -2.46, R) >droSim1.chr3R 10626340 93 - 27517382 UUAGGACGACUUUGUUGUUACUCCUUUUCGAAAAUUGUGCGGCUGGCGCGAGCUUUUCGCCGUAUUUUCCCAUUAUUUUUUGUUGGCCAAAAG--- ..((((.(((......)))..))))....((((...(((((((.(((....)))....)))))))))))(((.((.....)).))).......--- ( -21.30, z-score = -0.50, R) >consensus UUAGGACGACUUUGUUGUUACUCCUUUUCGAAAAUUGUGCGGCUGGCGCGAGCUUUUCGCCAUAUUUUCCUAUUAUUUUUUGUUGGCCAAAAG___ ......................................((((..(((....)))..)))).................................... ( -9.73 = -8.51 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:44 2011