| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,376,393 – 4,376,488 |
| Length | 95 |
| Max. P | 0.706698 |
| Location | 4,376,393 – 4,376,488 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.77 |
| Shannon entropy | 0.39008 |
| G+C content | 0.55197 |
| Mean single sequence MFE | -36.72 |
| Consensus MFE | -25.43 |
| Energy contribution | -24.69 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.706698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4376393 95 - 27905053 AUGUAU-------GCGCCCCUCGGCUGUGGAACAAGGUCCUUGAGUUUCCG-UUUGCA-UUUUGGGGCCGACCCAUCCA-AAGAUGGGUUUAUCUACGGCGAGGG ......-------....((((((.(((((((....((((((.((((.....-.....)-))).))))))((((((((..-..))))))))..))))))))))))) ( -41.40, z-score = -3.23, R) >droAna3.scaffold_13340 19681955 97 + 23697760 ACGAAU-------GC-CCCUUGGGGUGUGGGGCAAGGUCCUUGAGUUUCCGUUUUGCAUUUUUGGGGCCGACCCCAUUACAAGGGGGGUUUAUCUAUGGCGAAAC ..((((-------.(-((((((....((((((...((((((.(((..............))).))))))..))))))..))))))).)))).............. ( -37.54, z-score = -1.27, R) >droPer1.super_3 6121287 101 - 7375914 AUGCAAAGCCGCAGCGCCUUCUGGCUGUGGGGCAAGGUCCUUGGGUUUCCGUUUUGCA-UUUCGGUGGCGACCCCAUU---CGUUGGGUUUAUCCAUAGCGAGAG .((((((((((((((........))))))((((...))))..((....))))))))))-(((((((((.(((((....---....)))))...))))..))))). ( -34.20, z-score = -0.08, R) >dp4.chr2 23348971 101 - 30794189 AUGCAAAGCCGCAGCGCCUUGUGGCUGUGGGGCAAGGUCCUUGGGUUUCCGUUUUGCA-UUUCGGUGGCGACCCCAUU---CGUUGGGUUUAUCUAUAGCGAGAG .((((((((((((((........))))))((((...))))..((....))))))))))-(((((((((.(((((....---....)))))...))))..))))). ( -31.90, z-score = 0.52, R) >droSim1.chr3R 10619647 93 + 27517382 AUGUGA-------GCGCCCCUCGGCUGUGGAACAAGGUCCUUGAGUUUCCG-UUUGCA-UUUUGGGGCCGACCCUUUU---GGACGGGUUUAUCUACGGCGAGGG ......-------....((((((.(((((((....((((((.((((.....-.....)-))).))))))(((((....---....)))))..))))))))))))) ( -36.20, z-score = -1.49, R) >droSec1.super_0 3657035 97 + 21120651 AUGUAU--GUAU-GUGCCCCUCGGCUGUGGAACAAGGUCCUUGAGUUUCCG-UUUGCA-UUUUGGGGCCGACCCUUUU---GGACGGGUUUAUCUACGGCGAGGG ..((((--....-))))((((((.(((((((....((((((.((((.....-.....)-))).))))))(((((....---....)))))..))))))))))))) ( -37.00, z-score = -2.03, R) >droYak2.chr3R 8449546 99 - 28832112 AUGUGU-GGUAUAGCGCCCCUCGGCUGUGGAACAAGGUCCUUGAGUUUCCG-UUUGCA-UUUUGGGGCCGACCCUUUU---GGACGGGUUUAUCUACGGCGAGGG ..((((-......))))((((((.(((((((....((((((.((((.....-.....)-))).))))))(((((....---....)))))..))))))))))))) ( -38.80, z-score = -1.79, R) >consensus AUGUAU_______GCGCCCCUCGGCUGUGGAACAAGGUCCUUGAGUUUCCG_UUUGCA_UUUUGGGGCCGACCCCUUU___GGACGGGUUUAUCUACGGCGAGGG .................((((((.(((((((....((((((.(((...(......)...))).))))))(((((.((.....)).)))))..))))))))))))) (-25.43 = -24.69 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:43 2011