| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,373,619 – 4,373,728 |
| Length | 109 |
| Max. P | 0.904311 |
| Location | 4,373,619 – 4,373,728 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.25 |
| Shannon entropy | 0.40423 |
| G+C content | 0.48657 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -19.30 |
| Energy contribution | -19.80 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.904311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4373619 109 + 27905053 CAAGGCUUCCGCUUUAAAGGAUUAUUAAGUCCAAAAGGCAGCCCAAGGCAUUGAAAAUGUGGGAUGUGGGACGGAGGGCUCCAAAUUGAGGCGGUAGUCCACAACACAU ...((((.(((((((((.(((((....)))))....((.(((((...((((.....))))....((.....))..)))))))...))))))))).)))).......... ( -34.00, z-score = -1.56, R) >droAna3.scaffold_13340 19679295 98 - 23697760 CGAGGCUUCCGUUUUAAAG-AUUAUUAAUUCGAAGAGAUAGCCCAAGGCUUCCGCA------AAAAUGUGGGAAGGGAGUGGCAGGUGAAAUG----UCCAUAAUACAU .(..(((((((((((...(-(........))...))))).(((...)))(((((((------....))))))).))))))..).((.......----.))......... ( -21.60, z-score = -0.13, R) >droEre2.scaffold_4770 545128 92 - 17746568 CGAGGCUUCCGCUUUAAAGGAUUAUUAAGUCCAAAAGGCAGCCCAAGGCAUCGGAA--G---------------GGGGGUCAAAAUUGAGGCGGUAGUCCACAACACAU .(.((((.(((((((((.(((((....)))))....(((.(((...))).((....--)---------------)...)))....))))))))).)))))......... ( -29.60, z-score = -2.71, R) >droYak2.chr3R 8446843 105 + 28832112 CGAGGCUUCCGCUUUAAAGGAUUAUUAAGUCUAAAAGGCAGCCCAAGGCAUCGGAA--GCGGAAGGU--GCAGAAGGGGUCAAAAUUGAGGCGGUAGUCCACAACACAU .(.((((.(((((((((.(((((....)))))....(((..(((...(((((....--......)))--))....))))))....))))))))).)))))......... ( -31.60, z-score = -2.22, R) >droSec1.super_0 3654312 107 - 21120651 CGAGGCUUCCGCUUUAAAGGAUUAUUAAGUCCAAAAGGCAGCCCAAGGCAUUGGAA--GCGGGGUAUUGGACGGAGGGUUCAAAAUUGAGGCGGUAGUCCACAACACAU .(.((((.(((((((((.(((((....)))))........((((...((.......--)).)))).((((((.....))))))..))))))))).)))))......... ( -33.20, z-score = -2.15, R) >droSim1.chr3R 10616936 107 - 27517382 CGAGGCUUCCGCUUUAAAGGAUUAUUAAGUCCAAAAGGCAGCCCAAGGCAUUGGAA--GCGGGGUAUGGGACGGAGGGCUCAAAAUUGAGGCGGUAGUCCACAACACAU ....(((((((((((...(((((....)))))..))))).(((...)))...))))--))...((.((((((....(.((((....)))).)....)))).)))).... ( -35.10, z-score = -2.29, R) >consensus CGAGGCUUCCGCUUUAAAGGAUUAUUAAGUCCAAAAGGCAGCCCAAGGCAUCGGAA__GCGGGAUAUGGGACGGAGGGGUCAAAAUUGAGGCGGUAGUCCACAACACAU ...((((.(((((((((.(((((....)))))........(((...)))....................................))))))))).)))).......... (-19.30 = -19.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:38 2011