| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,359,607 – 4,359,702 |
| Length | 95 |
| Max. P | 0.971929 |
| Location | 4,359,607 – 4,359,702 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.72 |
| Shannon entropy | 0.25652 |
| G+C content | 0.29090 |
| Mean single sequence MFE | -20.79 |
| Consensus MFE | -16.65 |
| Energy contribution | -17.71 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.971929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4359607 95 + 27905053 CAGCCAAUUAGUUUUUGUUGUUGUUAAAUCGUUUUCAAAAAUGUAUUUAUA-------------------------CCCUAAGUGCAAACAAUGAGCAAUGACUAAAUCCAGAACCAUUU .......((((((.(((((((((((.....(....).....((((((((..-------------------------...)))))))))))))).))))).)))))).............. ( -16.40, z-score = -1.85, R) >droEre2.scaffold_4770 529986 120 - 17746568 CAGCCAAUUAGUUAUUGUUGUUGCUAAAUCGUUUCCAAAAAUGUAUUUAUCAUUUUAAAUGUAUACUUUUUUCAUUCCCCAAGUGCAAACAAUGAGCAAUGACUAAAUCCAGAACUAUUU .......((((((((((((((((.((((((((((....))))).)))))..........(((((..................)))))..)))).)))))))))))).............. ( -17.67, z-score = -1.23, R) >droSec1.super_0 3640486 120 - 21120651 CAGCCAAUUAGUUGUUGUUGUUGUUAAAUCGUUUUCAAAAAUGUAUUUAUAAGUUUAAAUGCAUACAUUUUUUAUACCCUAAGUGCAAACAAUGAGCAACGACUAAAUCCAGAACCAUUU .......((((((((((((((((((...............(((((((((......))))))))).(((((..........)))))..)))))).)))))))))))).............. ( -26.00, z-score = -3.43, R) >droSim1.chr3R 10603033 120 - 27517382 CAGCCAAUUAGUUAUUGUUGUUGUUAAAUCGUUUUCAAAAAUGUAUUUAUCACUUUAAAUGUAUACAUUUUUUAUACCCUAAGUGCAAACAAUGAGCAAUGACUAAAUCCAGAACCAUUU .......(((((((((((((((((((((((((((....))))).))))..(((((.....(((((.......)))))...)))))..)))))).)))))))))))).............. ( -23.10, z-score = -2.93, R) >consensus CAGCCAAUUAGUUAUUGUUGUUGUUAAAUCGUUUUCAAAAAUGUAUUUAUAA_UUUAAAUGUAUACAUUUUUUAUACCCUAAGUGCAAACAAUGAGCAAUGACUAAAUCCAGAACCAUUU .......((((((((((((((((((.....(....).....((((((((.......(((((....))))).........)))))))))))))).)))))))))))).............. (-16.65 = -17.71 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:35 2011