| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,358,726 – 4,358,823 |
| Length | 97 |
| Max. P | 0.516888 |
| Location | 4,358,726 – 4,358,823 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 79.68 |
| Shannon entropy | 0.38404 |
| G+C content | 0.50636 |
| Mean single sequence MFE | -27.31 |
| Consensus MFE | -17.36 |
| Energy contribution | -16.16 |
| Covariance contribution | -1.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4358726 97 - 27905053 GGUCCGCGACUUUAUUGCAUUCAAAAUGGAGCGCAACUAUAAUCACCAGAGCGGAAAUACCAAGUGA---GACGGGGUCGGAAUGAUUGGGGCCACUAAC ((((((((.(((((((........)))))))))).....((((((((.....((.....))......---(((...)))))..)))))))))))...... ( -26.60, z-score = -1.30, R) >droPer1.super_3 6100239 86 - 7375914 GCCUCGCGACUUUAUUGCAUUCAAAAUGGAGUGCAACUAUAAUCAAUAGAGCGGAAGUCCCCCCCUC---UUGGGAGGCAGAGAGGGCA----------- .((((.(((((((.((((((((......))))))))((((.....))))....))))))((.(((..---..))).))..).))))...----------- ( -29.60, z-score = -1.86, R) >dp4.chr2 23327871 85 - 30794189 GCCUCGCGACUUUAUUGCAUUCAAAAUGGAGUGCAACUAUAAUCAAUAGAGCGGAAGU-CCCCCCUC---UUGGGAGGCAGAGAGGGCU----------- .((((.(((((((.((((((((......))))))))((((.....))))....)))))-)(((((..---..))).))..).))))...----------- ( -29.40, z-score = -1.90, R) >droAna3.scaffold_13340 19653931 93 + 23697760 GGUCCGCGACUUUAUUGCAUUCAAAAUGGAGCGCAACUAUAAUCACCAGAGCGGAAAUGCCCGGGGAAGGGUUGGGGCCAGGAGGAGGAGGAC------- ((((((((.(((((((........))))))))))((((....((.((.(.(((....))).).))))..)))).)))))..............------- ( -26.50, z-score = -0.39, R) >droEre2.scaffold_4770 529132 97 + 17746568 GGUCCGCGACUUUAUUGCAUUCAAAAUGGAGCGCAACUAUAAUCACCAGAGCGGAAAUACCAAGUGA---GACGGGGUCGGAAUGAUUGGGGCCACUAAC ((((((((.(((((((........)))))))))).....((((((((.....((.....))......---(((...)))))..)))))))))))...... ( -26.60, z-score = -1.30, R) >droYak2.chr3R 8431561 97 - 28832112 GGUCCGCGACUUUAUUGCAUUCAAAAUGGAGCGCAACUAUAAUCACCAGAGCGGAAAUACCAAGUGA---GACGGGGUCGGAAUGAUUGGGGCCACUAAC ((((((((.(((((((........)))))))))).....((((((((.....((.....))......---(((...)))))..)))))))))))...... ( -26.60, z-score = -1.30, R) >droSec1.super_0 3639604 97 + 21120651 GGUCCGCGACUUUAUUGCAUUCAAAAUGGAGCGCAACUAUAAUCACCAGAGCGGAAAUACCAAGUGA---GACGGGGUCGGAAUGAUUGGGGCCACUAAC ((((((((.(((((((........)))))))))).....((((((((.....((.....))......---(((...)))))..)))))))))))...... ( -26.60, z-score = -1.30, R) >droSim1.chr3R 10602148 97 + 27517382 GGUCCGCGACUUUAUUGCAUUCAAAAUGGAGCGCAACUAUAAUCACCAGAGCGGAAAUACCAAGUGA---GACGGGGUCGGAAUGAUUGGGGCCACUAAC ((((((((.(((((((........)))))))))).....((((((((.....((.....))......---(((...)))))..)))))))))))...... ( -26.60, z-score = -1.30, R) >consensus GGUCCGCGACUUUAUUGCAUUCAAAAUGGAGCGCAACUAUAAUCACCAGAGCGGAAAUACCAAGUGA___GACGGGGUCGGAAUGAUUGGGGCCACUAAC ((((((((.(((((((........))))))))))..................((.....)).............)))))..................... (-17.36 = -16.16 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:34 2011