| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,357,658 – 4,357,802 |
| Length | 144 |
| Max. P | 0.993270 |
| Location | 4,357,658 – 4,357,802 |
|---|---|
| Length | 144 |
| Sequences | 5 |
| Columns | 156 |
| Reading direction | forward |
| Mean pairwise identity | 87.58 |
| Shannon entropy | 0.20989 |
| G+C content | 0.48860 |
| Mean single sequence MFE | -28.97 |
| Consensus MFE | -20.64 |
| Energy contribution | -20.52 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -3.42 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.60 |
| SVM RNA-class probability | 0.993270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4357658 144 + 27905053 ACCCAAGCCACCCAACUGCACUCCUCUUUCGUGUUGGCCCAUCCAAAC-----------CUACCUACCUACGUACCCGAUCCGUAUCUGAAUCAAUUAAUUUACCCGAUACGGAUGA-CCCUGCAAUAUUAAAGUACCACCGCAGUGUGCCUUCAA ....(((.(((...(((((......((((.((((((............-----------...........((....))((((((((((((((......)))))...)))))))))..-.....)))))).)))).......)))))))).)))... ( -27.82, z-score = -2.89, R) >droSim1.chr3R 10601077 141 - 27517382 -CUCAAACCACCCAACUGCACUCCUCUUUCGUGUUGGCCCAUCCAA-------------CAACCUACCUACCUACCCGAUCCGUAUCUGAAUCAAUUAAUUUACCCGAUACGGAUGA-CCCUGCAAUAUUAAACUACCACCGCAGUGUGCCUUCAA -.......(((...(((((............((((((.....))))-------------)).................((((((((((((((......)))))...)))))))))..-.......................))))))))....... ( -26.70, z-score = -3.97, R) >droSec1.super_0 3638505 143 - 21120651 ACCCAAACCACCCAGCUGCACUCCUCUUUCGUGUUGGCCCAUCCAAA------------CAACCUACCUACCUACCCGAUCCGUAUCUGAAUCAAUUAAUUUACCCGAUACGGAUGA-CCCUGCAAUAUUAAACUACCACCGCAGUGUGCCUUCAA ........(((...(((((...........((.((((.....)))).------------..))...............((((((((((((((......)))))...)))))))))..-.......................))))))))....... ( -23.60, z-score = -2.46, R) >droYak2.chr3R 8430460 156 + 28832112 ACCCAAACCACCCAACUGCAGUCCUCUUUCGUGUAGGCCCCUCCAACCAACUAACCAACCUACCUACCUACCUAUCAGAUCCGUAUCUGAAUCAAUUAAUUUACCCGAUACGGAUGAACCCUGCAAUAUUUAACUACCACCGCAGUGGGCCUACAA ...............................(((((((((......................................((((((((((((((......)))))...))))))))).....((((.................)))).))))))))). ( -32.83, z-score = -4.16, R) >droEre2.scaffold_4770 528069 141 - 17746568 -------CCACCCAACUGCACUCCCCUUUCGUGUUGGCCCAUCCAACCAA--------CCAACGCACCUACCCACCCGAUCCGUAUCUGAAUCAAUUAAUUUGCCCGAUACGGAUGAACCCUGCAAUAUUAAAGUACCACCGCAGUGGGCCCACAA -------...((((.((((...........(((((((.............--------))))))).............(((((((((.(...(((.....))).).)))))))))..........................))))))))....... ( -33.92, z-score = -3.62, R) >consensus ACCCAAACCACCCAACUGCACUCCUCUUUCGUGUUGGCCCAUCCAAAC___________CAACCUACCUACCUACCCGAUCCGUAUCUGAAUCAAUUAAUUUACCCGAUACGGAUGA_CCCUGCAAUAUUAAACUACCACCGCAGUGUGCCUUCAA ..............(((((..............((((.....))))................................((((((((((((((......)))))...)))))))))..........................))))).......... (-20.64 = -20.52 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:33 2011