| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,343,762 – 4,343,843 |
| Length | 81 |
| Max. P | 0.518636 |
| Location | 4,343,762 – 4,343,843 |
|---|---|
| Length | 81 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 73.77 |
| Shannon entropy | 0.46055 |
| G+C content | 0.46830 |
| Mean single sequence MFE | -13.01 |
| Consensus MFE | -7.97 |
| Energy contribution | -7.64 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4343762 81 + 27905053 ----------GCAUUUAUCACUCCGCCCAACCACUUGUUGUUGUUGGACUCUGCCCGCCCCAUACA-----ACG----CCAUCCA--UUAUCCAUUAAAAUA ----------................(((((.((.....)).)))))...................-----...----.......--............... ( -7.40, z-score = 0.17, R) >droSim1.chr3R 10586802 81 - 27517382 ----------GCGUUUACCACUCCGCCCAACCACUUGUUGUUGUUGGACUCUGCCCGCCCCAUACA-----ACG----CCAUCCA--UUAUCCAUUAAAAUA ----------(((((.........(((((((.((.....)).))))).....))...........)-----)))----)......--............... ( -10.15, z-score = -0.72, R) >droSec1.super_0 3624516 81 - 21120651 ----------GCGUUUACCACUCCGCCCAACCACUUGUUGUUGUUGGACUCUGCCCGCCCCAUACA-----ACG----CCAUCCA--UUAUCCAUUAAAAUA ----------(((((.........(((((((.((.....)).))))).....))...........)-----)))----)......--............... ( -10.15, z-score = -0.72, R) >droYak2.chr3R 8416245 81 + 28832112 ----------GCGUUUAGCACUCCGCCCAACCACUUGUUGUUGUUGGACUCUGCCCGCCCCAUAUA-----ACG----CCAUCCA--UUAUCCAUUAUAAUA ----------(((((..((.....))(((((.((.....)).)))))..................)-----)))----)......--............... ( -12.60, z-score = -1.20, R) >droEre2.scaffold_4770 514227 80 - 17746568 ----------GCGUUAACCGCUCCGCCCAACCACUUGUUGUUGUUGGACUCUGCCCGCCCCACA-A-----ACG----CCAUCCA--UUAUCCAUUAUAAUA ----------(((((....((...(((((((.((.....)).))))).....))..))......-)-----)))----)......--............... ( -12.00, z-score = -1.05, R) >droAna3.scaffold_13340 19640593 98 - 23697760 ACGGAAACAACAGAUUCCAGCGACACCCGACCACUUGUUGUUGUUGGACUUUGUG-GCCCCGGAGAUAAUUACGAGUUCCAUCCA--GCACCCGU-AUAAUA ((((.....(((((.((((((((((..(((....))).)))))))))).))))).-((...(((...(((.....)))...))).--))..))))-...... ( -25.20, z-score = -1.64, R) >droWil1.scaffold_181089 908292 80 + 12369635 ----------GCAUAAACUAAACCUACCGACCACUUGUUGUUGUCGGAAUUGG---ACUCUUGAUG-----CUA----UCAUUAAAUUUAAUCAUUAAAACA ----------((((........((..(((((.((.....)).)))))....))---.......)))-----)..----........................ ( -13.56, z-score = -2.15, R) >consensus __________GCGUUUACCACUCCGCCCAACCACUUGUUGUUGUUGGACUCUGCCCGCCCCAUACA_____ACG____CCAUCCA__UUAUCCAUUAAAAUA ..........................(((((.((.....)).)))))....................................................... ( -7.97 = -7.64 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:32 2011