| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,343,030 – 4,343,130 |
| Length | 100 |
| Max. P | 0.897671 |
| Location | 4,343,030 – 4,343,130 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 66.32 |
| Shannon entropy | 0.62447 |
| G+C content | 0.43483 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -8.70 |
| Energy contribution | -10.52 |
| Covariance contribution | 1.82 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.897671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4343030 100 - 27905053 -----------------CUCGAGUGGAAUUAAAUUGGCUGAAAAUUAUCGUGCUAAGCUGUAGAUUCCGCUCUUGCUCAUCCUGUUUUCCAUUUUCCUUUGCGGCCUGCCGCCCACG- -----------------...((((((((((.(.((((((((......))).)))))....).))))))))))............................((((....)))).....- ( -25.80, z-score = -2.01, R) >droSim1.chr3R 10586056 100 + 27517382 -----------------CUAGAGUGGAAUUUAAUUGGCUGAAAAUUAUCCUGCUAAGCUGUAGAUUCCGCUCUUGCUCAUCCUGUUUUCCAUUUUCCUUUGCGGCCUGCCGCCCACG- -----------------..(((((((((((((.(((((.((......))..)))))....)))))))))))))...........................((((....)))).....- ( -28.80, z-score = -3.34, R) >droSec1.super_0 3623826 97 + 21120651 -----------------CUAGAGUGGAAUUUAAUUGGCUGAAAAUUAUCCUCCUAAGCUGUAGAUUCCGCUCUUGCUCAUCCUGUUUUCCAUUUUCCUUU---GCCUGCCGCCCACG- -----------------..(((((((((((((...((((................)))).)))))))))))))...........................---..............- ( -20.19, z-score = -1.81, R) >droYak2.chr3R 8415596 100 - 28832112 -----------------CUGGAGUGGAAUUUAAUUGGCUGAGAAUUAUCCUGCUAAGUUGUAGAUUCCGUUCUGGCUCAUGCUAUUUUCCAUUUUCCUUUGCGGCCUGCCGCCCACG- -----------------.(((((.((((((((.(((((.((......))..)))))....))))))))....((((....))))..))))).........((((....)))).....- ( -28.40, z-score = -1.85, R) >droEre2.scaffold_4770 513697 100 + 17746568 -----------------CUAGAGUGGAAUUAAAUUGGUUGAAAAUUAUCUUGCUAAUUUGUAGAUUCCACUCUGGCUCAUCCUAUUUUCCAUUUUCCUUUGCGGCCUGCCACCCACG- -----------------(((((((((((((((((((((.((......))..))))))))...)))))))))))))...........................((....)).......- ( -26.00, z-score = -3.34, R) >droAna3.scaffold_13340 19639874 95 + 23697760 ---------------CUCGGUAUUAAAAUUUAAUUGUCUG-CAAUUAUCCGACAAAUCUGUUGAAGCCAAUUUAG------CCAUCUUGCACCUAACCUUGCGGUCUGAGGCCAACG- ---------------.((((..........((((((....-)))))).)))).......((((..(((......(------(......))..(..(((....)))..).))))))).- ( -17.00, z-score = -0.32, R) >droWil1.scaffold_181089 907637 115 - 12369635 UUCAUCUUCAAACUAUCUGCUCGUGAAAUUUAAUUUCAACUUGAUGAAAAAUUUGAUUUGAAAAA---AUGCUUACAUGAUUUGGGAUUGCUUUUCACUGGUGGCCCCUCAACCACAA ......................((((((..((((..(((..(.(((((..((((.........))---))..)).))).).)))..))))..))))))..((((........)))).. ( -19.50, z-score = -0.55, R) >consensus _________________CUAGAGUGGAAUUUAAUUGGCUGAAAAUUAUCCUGCUAAGCUGUAGAUUCCGCUCUUGCUCAUCCUGUUUUCCAUUUUCCUUUGCGGCCUGCCGCCCACG_ ...................(((((((((((...(((((.............)))))......)))))))))))...........................((((....))))...... ( -8.70 = -10.52 + 1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:31 2011