| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,329,379 – 4,329,457 |
| Length | 78 |
| Max. P | 0.815091 |
| Location | 4,329,379 – 4,329,457 |
|---|---|
| Length | 78 |
| Sequences | 8 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 58.90 |
| Shannon entropy | 0.78950 |
| G+C content | 0.36740 |
| Mean single sequence MFE | -12.74 |
| Consensus MFE | -4.83 |
| Energy contribution | -3.49 |
| Covariance contribution | -1.34 |
| Combinations/Pair | 1.93 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4329379 78 + 27905053 AGUUCAACUCUCCAACACUCCAAAUUUCGACAACUUUUGAGAUUUUAACUCAGACAACCUUUUUUCGGAGUGGUAUUU ...............(((((((((((((((......))))))))).......((.((....)).))))))))...... ( -14.00, z-score = -1.45, R) >droSim1.chr3R 10571577 75 - 27517382 AGUUCAGCCG--CACCACUCCGAAUUUCGACAACUUUUGAGAUUUCAACUCAGACGAAAUCUUG-CGAAGUGGUAUUU ..........--.((((((.((.((((((......((((((.......))))))))))))....-)).)))))).... ( -17.30, z-score = -1.51, R) >droSec1.super_0 3610293 75 - 21120651 AGUUCAACCG--CACCACUCCGAAUUUCGACAACUUUUGAGAUUUCAACUCAGACGAAAUCUUG-CGAAGUGGUAUUU ..........--.((((((.((.((((((......((((((.......))))))))))))....-)).)))))).... ( -17.30, z-score = -1.87, R) >droYak2.chr3R 8401820 72 + 28832112 AGUUCAACCG--CACCACUCCGAGUUUCGCUAACUUUUGAGAUUUCCACUCAGACGAAAUUUUG-CAGAGUAUUU--- ..........--....((((.((((((((......((((((.......))))))))))))))..-..))))....--- ( -11.90, z-score = -0.94, R) >droEre2.scaffold_4770 499876 75 - 17746568 AGUUCAACCG--CACCACUCCGAGUUUCGCCAACUUUUGAGAUUUCAAUUCAGACGAAAUUUGG-CAGAGAGGUAUUC .........(--(..(.((((((((((((.......(((......)))......))))))))))-.)).)..)).... ( -15.32, z-score = -0.89, R) >droAna3.scaffold_13340 19624757 76 - 23697760 AGUUGAAUUCCCCAA-ACUCCGGUAUUCGCCAGUUUUUGUGAUUUUUCUUGUCAAAAAGUUUUU-CAGGUAAGCUUUC ((..((((..(..((-(((..(((....))))))))..)..))))..))......(((((((..-.....))))))). ( -9.50, z-score = 0.12, R) >dp4.chr2 23298197 66 + 30794189 ------ACUU--UAAGUCUUGAAGAU--GAUGAUAUACGAUGAUUUUUCUACCGAAGAUUCUUG--AAUAUAAUAUUU ------.(((--((.....)))))..--....((((.(((.((.(((((....))))).)))))--.))))....... ( -7.80, z-score = -0.13, R) >droPer1.super_3 6070636 66 + 7375914 ------ACUU--UAAGGCUUGAACAU--GAUGAUAUACGAUGAUUUUUCUACCGAAGAUUAUUG--AAUAUAAUAUUU ------....--..............--....((((.(((((((((((.....)))))))))))--.))))....... ( -8.80, z-score = -1.80, R) >consensus AGUUCAACCG__CAACACUCCGAAUUUCGACAACUUUUGAGAUUUCAACUCAGACAAAAUUUUG_CAAAGUAGUAUUU ................................((((((((((((((.........)))))))))..)))))....... ( -4.83 = -3.49 + -1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:30 2011