| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,310,968 – 4,311,058 |
| Length | 90 |
| Max. P | 0.969113 |
| Location | 4,310,968 – 4,311,058 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 87.66 |
| Shannon entropy | 0.23323 |
| G+C content | 0.48337 |
| Mean single sequence MFE | -25.62 |
| Consensus MFE | -23.06 |
| Energy contribution | -22.78 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4310968 90 + 27905053 --AGUCGAGAAUGUAUUCGGAUUACCCACUCGAAAGAAGGUUGGACGCAUAGCCAGCCAAGCGUUUAACGCGACAAAA--AACAAGAGUUGGGG --..(((((......)))))....(((((((.......((((((.(.....)))))))..(((.....))).......--.....))).)))). ( -26.40, z-score = -2.54, R) >droAna3.scaffold_13340 4100058 92 + 23697760 AGACGGGAGAACAUUUUCGUAUUACCCACUCGAAAGAAGGUUGGACUUGAAGCCAGCCAAGCGUUGGAUGCGACAUAAUCACAACAGGCUGG-- ....(((((.((......)).)).)))..((....)).((((((........)))))).((((((((((........))).))))..)))..-- ( -23.40, z-score = -1.05, R) >droEre2.scaffold_4770 481487 90 - 17746568 --AGUCGAGAAUGUAUUCGGAUUACCCACUCGAAAGAAGGUUGGACGCAUAGCCAGCCAAGCGUUUAACGUGACAAAA--AACCAGAGUUGGGG --..(((((......)))))....(((((((.......((((((.(.....)))))))..(((.....))).......--.....))).)))). ( -24.10, z-score = -1.64, R) >droYak2.chr3R 8382931 90 + 28832112 --AGUCGAGAAUGUAUUCGGAUUACCCACUCGAAAGAAGGUUGGCCGCAUAGCCAGCCAAGCGUUUAACGUGACAAAA--AUGAUGAGUUGGGG --..(((((......)))))....((((((((......(((((((......)))))))..(((.....))).......--....)))).)))). ( -27.00, z-score = -2.21, R) >droSec1.super_0 3592089 90 - 21120651 --AGUCGAGAAUGUAUUCGGAUUACCCACUCGAAAGAAGGUUGGACGCAUAGCCAGCCAAGCGUUUAACGCGACAAAA--AACCAGAGUUGGGG --..(((((......)))))....(((((((.......((((((.(.....)))))))..(((.....))).......--.....))).)))). ( -26.40, z-score = -2.30, R) >droSim1.chr3R 10553106 90 - 27517382 --AGUCGAGAAUGUAUUCGGAUUACCCACUCGAAAGAAGGUUGGACGCAUAGCCAGCCAAGCGUUUAACGCGACAAAA--AACCAGAGUUGGGG --..(((((......)))))....(((((((.......((((((.(.....)))))))..(((.....))).......--.....))).)))). ( -26.40, z-score = -2.30, R) >consensus __AGUCGAGAAUGUAUUCGGAUUACCCACUCGAAAGAAGGUUGGACGCAUAGCCAGCCAAGCGUUUAACGCGACAAAA__AACAAGAGUUGGGG ....(((((......)))))....(((((((.......((((((.(.....)))))))..(((.....)))..............))).)))). (-23.06 = -22.78 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:28 2011