| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,298,089 – 4,298,181 |
| Length | 92 |
| Max. P | 0.548177 |
| Location | 4,298,089 – 4,298,181 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 63.87 |
| Shannon entropy | 0.65400 |
| G+C content | 0.54671 |
| Mean single sequence MFE | -14.50 |
| Consensus MFE | -7.92 |
| Energy contribution | -7.70 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.37 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4298089 92 + 27905053 ----CCUCAGCCAUCC----UCACAUCUCACUUCUUACAAUCG------AAUUCCAUC--CUACCACGCAGCCGCCCCGCACAGCCCCGCUAAUUAAUGUGGGCGUGG ----............----.......................------.........--...((((((.((......))......((((........)))))))))) ( -17.00, z-score = -1.15, R) >droSim1.chr3R 10540162 96 - 27517382 ----CCUCAGCCAUCCAUCCUCACAUCUCACUUCUUACAAUCC------AAUCCCAUC--CUACCACGCAGCCGCCCCGCACAGCCCCGCUAAUUAAUGUGGGCGUGG ----.......................................------.........--...((((((.((......))......((((........)))))))))) ( -17.00, z-score = -1.77, R) >droYak2.chr3R 8369680 92 + 28832112 ----CUUCGGCCAUCC----UCACAUCUCACUACUCACAAUCC------AAUCCUAUA--CUACCUCUCAACCGCCCCGCACAGCCCCGCUAAUUAAUGUGGGCGUGG ----............----.......................------.........--...........((((((((((.(((...)))......)))))).)))) ( -13.50, z-score = -0.71, R) >droEre2.scaffold_4770 467433 98 - 17746568 ----CUUCAGCCAUCC----UCACAUCUCACUUCUUACAAGCCCAUACCAAUACCAUC--CUACCACUCAGCCGCCCCGCACAGCCCCGCUAAUUAAUGUGGGCGUGG ----............----......................................--...((((...((......))...((((.((........)))))))))) ( -14.20, z-score = -0.33, R) >droAna3.scaffold_13340 19591251 73 - 23697760 -------------------------CCUCAGCCAUCUUCAUUG--------CCUCAAC--CUCUUAGUCGUCGGGCCCUCACAGCCCCUCUAAUUAAUGUGGGCGUGG -------------------------.............(((.(--------((.((..--...((((.....((((.......))))..))))......)))))))). ( -13.80, z-score = 0.33, R) >droWil1.scaffold_181089 857279 107 + 12369635 UACGUUUUGGCCAACGAAUCUUCACUGUUUAUCCUC-CAAUCCCCCACCCCCCCCAUCGCUUAUAUAUCAGCCUUCCAUCGUCAUGUCGCUAAUUAAAGUGGGCGUGA ...(..((((.....((((.......)))).....)-)))..)...............(((........))).........((((((((((......))).))))))) ( -11.50, z-score = 1.40, R) >consensus ____CUUCAGCCAUCC____UCACAUCUCACUUCUCACAAUCC______AAUCCCAUC__CUACCACUCAGCCGCCCCGCACAGCCCCGCUAAUUAAUGUGGGCGUGG ...............................................................................(((.((.((((........))))))))). ( -7.92 = -7.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:25 2011