| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,275,463 – 4,275,572 |
| Length | 109 |
| Max. P | 0.500000 |
| Location | 4,275,463 – 4,275,572 |
|---|---|
| Length | 109 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 85.76 |
| Shannon entropy | 0.31812 |
| G+C content | 0.43309 |
| Mean single sequence MFE | -26.64 |
| Consensus MFE | -20.94 |
| Energy contribution | -20.98 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 4275463 109 - 27905053 --UCGCCUUCAGUCAUCGGCGUUC---UUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU --..(((((((((.(((((((...---.))))(((.(((....))).....(((((((((((...............)))))))))))..))))))...))))))).))..... ( -27.26, z-score = -1.40, R) >droPer1.super_3 6007059 112 - 7375914 --UCGCUUUCAGUCAUCGACGUUCUUGCUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU --..((.....(((...)))......))....((((...............(((((((((((...............))))))))))).((((......))))..))))..... ( -24.86, z-score = -0.36, R) >dp4.chr2 23234684 112 - 30794189 --UCGCUUUCAGUCAUCGACGUUCUUGCUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU --..((.....(((...)))......))....((((...............(((((((((((...............))))))))))).((((......))))..))))..... ( -24.86, z-score = -0.36, R) >droAna3.scaffold_13340 19569237 112 + 23697760 --CGGCCUUCAGUCAUCGGCGUUCACUGUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU --.((((((((((.(((.(((.....)))((((...(((....))).....(((((((((((...............))))))))))).)))))))...))))))).))).... ( -30.36, z-score = -1.59, R) >droEre2.scaffold_4770 444972 109 + 17746568 --GCGCCUUCAGUCAUCGGCGUUC---UUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU --(((((..........)))))..---.....((((...............(((((((((((...............))))))))))).((((......))))..))))..... ( -28.46, z-score = -1.47, R) >droYak2.chr3R 8346002 109 - 28832112 --GCGCCUUCAGUCAUCGGCGUUC---UUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGGGCCUUUU --(((((..........)))))..---................(((((...(((((((((((...............))))))))))).((((......))))..))))).... ( -31.56, z-score = -2.27, R) >droSec1.super_0 3556827 109 + 21120651 --UCGCCUUCAGUCAUCGGCGUUC---UUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU --..(((((((((.(((((((...---.))))(((.(((....))).....(((((((((((...............)))))))))))..))))))...))))))).))..... ( -27.26, z-score = -1.40, R) >droSim1.chr3R 10517200 108 + 27517382 --UCGCCUUCAGUCAUCGGCGUUC---UUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUC-AAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU --..(((((((((.(((((((...---.))))(((.(((....))).....(((((((((((..(.....-...)..)))))))))))..))))))...))))))).))..... ( -28.00, z-score = -1.55, R) >droWil1.scaffold_181089 836114 114 - 12369635 GAGCUGUCCUUGUUACUGCUUCUGCUGCUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU ((((.((....((....((....)).)).)).)))).......((..(...(((((((((((...............))))))))))).((((......))))..)..)).... ( -28.26, z-score = -0.70, R) >droVir3.scaffold_13047 7409704 96 - 19223366 -----------------CUGCCU-CUGCUACUGCGCAGUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGUCUUUU -----------------..(((.-((((......)))).....))).....(((((((((((...............))))))))))).((((......))))........... ( -22.96, z-score = -0.94, R) >droMoj3.scaffold_6540 3332964 102 - 34148556 -----------GCUGCCCCGCCU-CUGCUGCUGCGAAGUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU -----------((.((...((..-..)).)).)).........((..(...(((((((((((...............))))))))))).((((......))))..)..)).... ( -24.16, z-score = -0.42, R) >droGri2.scaffold_14830 3257915 96 - 6267026 ------------------CUGCCUCUGCUGCUGCUCAGUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGUUGAAGAGCCUUUU ------------------..............((((..(((((.((((...(((((((((((...............)))))))))))...).)))...))))).))))..... ( -21.66, z-score = -0.44, R) >consensus __UCGCCUUCAGUCAUCGGCGUUC_UGCUGCUGCUCACUCAAUGGUCCAUAAAUCGGUUGUCAACUAUUCAAAUGCAGACAAUUGAUUACAGCGAUAAAGCUGAAGAGCCUUUU ................................((((...............(((((((((((...............))))))))))).((((......))))..))))..... (-20.94 = -20.98 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:22 2011