| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,745,620 – 6,745,761 |
| Length | 141 |
| Max. P | 0.813986 |
| Location | 6,745,620 – 6,745,761 |
|---|---|
| Length | 141 |
| Sequences | 6 |
| Columns | 144 |
| Reading direction | forward |
| Mean pairwise identity | 74.10 |
| Shannon entropy | 0.46971 |
| G+C content | 0.44685 |
| Mean single sequence MFE | -41.27 |
| Consensus MFE | -20.90 |
| Energy contribution | -23.05 |
| Covariance contribution | 2.15 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6745620 141 + 23011544 AUGGAUCGGCCU---UCAAGGCAGACUAGAUGAUUUAGUCUCGGCUAAUACUACCCAUCCAUUUGGGUGCUCAUCUCUUUCGUCAGUGGCCUAUUAGAUCUCUAAGGUUAAACCAAUUUGUUUGGCAUCGGUCGAAUGGGAAUC .(((.(..(((.---...((((..(((.(((((.(((((....)))))...((((((......))))))..........)))))))).)))).((((....)))))))..).))).((..((((((....))))))..)).... ( -40.90, z-score = -1.27, R) >droAna3.scaffold_12916 8325325 134 + 16180835 GUUGAUGUGUUUCGAUCCAGGGGGUCUUUAUGGC-------GAACCGAUUCUUCCCAUCACAUCUAAUUCGCAUCUCUCUCGUCGGGGGCCAAUUAGAUCUCCGAGGCUAAAAUAAUUUAUUGGCCAACACGGGAAAAAUG--- ...((((((....(((((...)))))...((((.-------(((.......))))))))))))).............(((((((((((..(.....)..))))))((((((.........))))))....)))))......--- ( -36.50, z-score = -0.57, R) >droEre2.scaffold_4929 15663126 120 + 26641161 AUGGAGCUGCCU---UCAAGGCAGACUAGAUGAU------------------AGCCAUCAAUUUGGGUGCUCAUCCCUUUCGUCAGUGGCCUAUUAGAUCUCUAAGGCUGAACUAAUUUGUUUGGCAUCGGUCAGAUAGGA--- ..(((((((((.---....))))).)).((((((------------------(.(((......))).)).)))))))............((((((.((((......((..(((......)))..))...)))).)))))).--- ( -38.70, z-score = -1.21, R) >droYak2.chr2L 16160068 119 - 22324452 AUGGAGCUGCCU---UCAAGGCAGACUAGAUGAU------------------AUCCAUCAAUGUGGGUGCUCAUCGCUUUCGUCAGUGGCCUAUUAGAUCUCUUAGGCAGAACUAAUUUGUUUGGCAUGGGUCUGAUAGG---- (((((((((((.---....)))))....((((((------------------((((((....))))))).)))))..))))))......((((((((((((.....((.((((......)))).))..))))))))))))---- ( -42.00, z-score = -2.32, R) >droSec1.super_3 2284510 141 + 7220098 AUGGAUCUGCCU---UCAAGGCAGACUAGAUGAUUUAGUCUGGGCUAAUACUACCCAUCAAUUUGGGUGAUCAUCUCUUUCGUCAGUGGCCUAUUAGAUCUCUAAGGUUGAACCAAUUUGUUUGGCAUCGGUCGAAUGGAAAUC .(((.((((((.---....)))))))))(((((((((((....)))))...((((((......))))))))))))..((((((...(((((..((((....)))).((..(((......)))..))...))))).))))))... ( -45.10, z-score = -2.48, R) >droSim1.chr2L 6545664 141 + 22036055 AUGGAUCUGCCU---UCAAGGCAGACUAGAUGAUUUAGUCUGGGCUAAUACUACCCAUCAAUUUGGGUGCUCAUCUCUUUCGUCAGUGGCCUAUUAGAUCUCUAAGGUUGAACCAAUUUGUUUGGCAUCGGUCGAAUGAAAAUC .(((.((((((.---....)))))))))(((((.(((((....)))))...((((((......)))))).)))))..((((((...(((((..((((....)))).((..(((......)))..))...))))).))))))... ( -44.40, z-score = -2.66, R) >consensus AUGGAUCUGCCU___UCAAGGCAGACUAGAUGAU_______GGGCUAAUACUACCCAUCAAUUUGGGUGCUCAUCUCUUUCGUCAGUGGCCUAUUAGAUCUCUAAGGCUGAACCAAUUUGUUUGGCAUCGGUCGAAUAGGA___ .(((..((((((......))))))(((.(((((.(((((....)))))....(((((......)))))...........))))))))(((((..(((....))))))))...))).((((((((((....)))))))))).... (-20.90 = -23.05 + 2.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:50 2011