| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,258,147 – 4,258,239 |
| Length | 92 |
| Max. P | 0.731632 |
| Location | 4,258,147 – 4,258,239 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.77 |
| Shannon entropy | 0.49233 |
| G+C content | 0.48365 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -13.20 |
| Energy contribution | -14.21 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4258147 92 + 27905053 ---------------CCUUUCUUACAAGGAUGCUGACGUAGCAACGGGA------AGCGCCUGCACGACUGGGUUCACCCGGUCUAAUGUAUUUUCAUUUUAUAGGCUCAUUA ---------------((((......))))..(((..(((....)))...------)))(((((...(((((((....))))))).((((......))))...)))))...... ( -27.50, z-score = -2.15, R) >droAna3.scaffold_13340 19552178 111 - 23697760 CCCUCCCCCGACAAAUAGAACCAUCCAGGAUGCUGGUGGCGAGACCGAGACAUCCUGCGCCAGGCCAGCACGGCCUGCC--AUAUAAUGUAUUUUCAUUUUAUAGGCUCAUUA .................((.((...((((((((((((......))).)).))))))).(.((((((.....)))))).)--(((.((((......)))).))).)).)).... ( -31.30, z-score = -1.17, R) >droEre2.scaffold_4770 427786 79 - 17746568 ---------------CCUUUCCAUCAAAGAUGCUGGCGUAGCAACGGG-------------------ACUGGGUUCACCCGGCCCAAUGUAUUUUCAUUUUAUAGGCUCAUUA ---------------.............((((..(((.((.....(((-------------------.(((((....))))))))((((......))))...)).))))))). ( -20.20, z-score = -0.72, R) >droYak2.chr3R 8328374 98 + 28832112 ---------------CCUUUCCAACAAGGAUGCUGACGUAGCAACGGGAGCGGGAAACGCCCGCACGACCGGGCUCACCCGGUCCAAUGUAUUUUCAUUUUAUAGGCUCAUUA ---------------((..(((.....)))(((((...)))))..))(((((((.....)))(((.(((((((....)))))))...)))...............)))).... ( -31.50, z-score = -1.67, R) >droSec1.super_0 3539759 92 - 21120651 ---------------CCUUCCUUACAAGGAUGCUAACGUAGCAACGAGA------AGCGCCUGCACGACUGGGUUCACCCGGUCUAAUGUAUUUUCAUUUUAUAGGCUCAUUA ---------------...((((....)))).(((..(((....)))...------)))(((((...(((((((....))))))).((((......))))...)))))...... ( -26.00, z-score = -2.17, R) >droSim1.chr3R 10499976 92 - 27517382 ---------------CCUUCCUUACAAGGAUGCUAACGUAGCAACGGGA------AGCGUCUGCACGACUGGGUUCACCCGGUCUAAUGUAUUUUCAUUUUAUAGGCUCAUUA ---------------.......((((.(((((((..(((....)))...------)))))))....(((((((....)))))))...))))...................... ( -25.30, z-score = -1.71, R) >consensus _______________CCUUUCCAACAAGGAUGCUGACGUAGCAACGGGA______AGCGCCUGCACGACUGGGUUCACCCGGUCUAAUGUAUUUUCAUUUUAUAGGCUCAUUA ...............(((........(((((((...((......))....................(((((((....)))))))....)))))))........)))....... (-13.20 = -14.21 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:21 2011