| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,248,613 – 4,248,664 |
| Length | 51 |
| Max. P | 0.957940 |
| Location | 4,248,613 – 4,248,664 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 72.47 |
| Shannon entropy | 0.42126 |
| G+C content | 0.32843 |
| Mean single sequence MFE | -10.43 |
| Consensus MFE | -6.81 |
| Energy contribution | -6.81 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.65 |
| SVM RNA-class probability | 0.957940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4248613 51 + 27905053 AAAUCUGGGAAAU--ACUCUUGAUG--AAAUAGGAUUAGUAAUUGCAGGAAUAUA ...((((.((..(--(.(((((...--...))))).))....)).))))...... ( -5.40, z-score = -0.07, R) >droEre2.scaffold_4770 418226 51 - 17746568 --ACUCUAGAACCCAAAUGUUGAUA--AAAUAAGAUCAGUAAUUGAAGGAAUAUA --.........(((((.(((((((.--.......))))))).)))..))...... ( -4.30, z-score = 0.09, R) >droSec1.super_0 3530285 51 - 21120651 --ACCUGCGAAAU--ACUCUUGAUCUUGAGGAGGAUCAAAAAUUGCAGGAAUAUU --.(((((((...--....((((((((....))))))))...)))))))...... ( -16.00, z-score = -3.91, R) >droSim1.chr3R 10490474 51 - 27517382 --ACCUGCGAAAU--ACUCUUGAUCUUGAGGAGGAUCAAAAAUUGCAGGAAUAUU --.(((((((...--....((((((((....))))))))...)))))))...... ( -16.00, z-score = -3.91, R) >consensus __ACCUGCGAAAU__ACUCUUGAUC__AAAGAGGAUCAAAAAUUGCAGGAAUAUA ...(((((((......(((((.......))))).........)))))))...... ( -6.81 = -6.81 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:20 2011