| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,247,126 – 4,247,227 |
| Length | 101 |
| Max. P | 0.722901 |
| Location | 4,247,126 – 4,247,227 |
|---|---|
| Length | 101 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 75.63 |
| Shannon entropy | 0.50244 |
| G+C content | 0.41535 |
| Mean single sequence MFE | -18.92 |
| Consensus MFE | -8.23 |
| Energy contribution | -8.26 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4247126 101 - 27905053 UCGACAUAAGUCCUUGCACAUCAACUCAAUUGAUGACCCUUUGGCAGUUUAACUGCCUCAACA-----UCGCUUAAU--GUGCACUCCAUCAACAUAAAUCACUCAUA ..(((....)))..(((((((.........(((((.......(((((.....)))))....))-----)))....))--)))))........................ ( -18.92, z-score = -2.56, R) >droSim1.chr3R 10488960 101 + 27517382 UCGACAUAAGUCCUUGCACAUCAACUCAAUUGAUGACCCUUUGGCAGUUUAACUGCCUCAACA-----UCGCUUAAU--GUGCACUCCAUCAACAUAAAUCACUCAUA ..(((....)))..(((((((.........(((((.......(((((.....)))))....))-----)))....))--)))))........................ ( -18.92, z-score = -2.56, R) >droSec1.super_0 3528812 101 + 21120651 UCGACAUAAGUCCUUGCACAUCAACUCAAUUGAUGACCCUUUGGCAGUUUAACUGCCUCAACA-----UCGCUUAAU--GUGCACUCCAUCAACAUAAAUCACUCAUA ..(((....)))..(((((((.........(((((.......(((((.....)))))....))-----)))....))--)))))........................ ( -18.92, z-score = -2.56, R) >droYak2.chr3R 8317091 101 - 28832112 UCGACAUAAGUCCUUGCACAUCAACUCAAUUGAUGACCCUUUGGCAGUUUAACUGCCUCAACA-----UCGCUUAAU--GUGCACUCCAUCAACAUAAAUCACUCAUA ..(((....)))..(((((((.........(((((.......(((((.....)))))....))-----)))....))--)))))........................ ( -18.92, z-score = -2.56, R) >droEre2.scaffold_4770 416722 101 + 17746568 UCGACAUAAGUCCUUGCACAUCAACUCAAUUGAUGACCCUUUGGCAGUUUAACUGCCUCAACA-----UCGCUUAAU--GUGCACUCCAUCAACAUAAAUCACUCAUA ..(((....)))..(((((((.........(((((.......(((((.....)))))....))-----)))....))--)))))........................ ( -18.92, z-score = -2.56, R) >droAna3.scaffold_13340 19541023 101 + 23697760 GCGACUUAAGUCCCUGCACAUCGACUCAAUUGAUGACCCUUUGGCAGUUAAACUGCCUCAACA-----UCGCUUAAU--GUGCAGUCCAUCAACAUAAAUCACUCAUA ..(((....))).((((((((..(......(((((.......(((((.....)))))....))-----))).)..))--))))))....................... ( -23.00, z-score = -2.95, R) >dp4.chr2 23204908 89 - 30794189 -------------CUGCACAUCGACUCAAUUGAUGACCCUUUGGCAGUUAAACUGCCUCCACA----GACGCUUAAU--GUGCACUCCAUCAACAUAAAUCACUCAUA -------------.(((((((..(.(((.....)))......(((((.....)))))......----.....)..))--)))))........................ ( -16.80, z-score = -1.99, R) >droPer1.super_3 5977264 89 - 7375914 -------------CUGCACAUCGACUCAAUUGAUGACCCUUUGGCAGUUAAACUGCCUCCACA----GACGCUUAAU--GUGCACUCCAUCAACAUAAAUCACUCAUA -------------.(((((((..(.(((.....)))......(((((.....)))))......----.....)..))--)))))........................ ( -16.80, z-score = -1.99, R) >droVir3.scaffold_13047 7369106 108 - 19223366 UUAACACGGGUCUAUUCCAACAAAAUGUGACGAUUGACAAUUGACAGUUUAACUGUGUCAAAAGGCCAUUGCUUAACGUGUGCACUCCAUCAACAUAAAUCACUCAUA ...(((((.(((((((.......)))).)))..(((((.....((((.....))))))))).((((....))))..)))))........................... ( -16.30, z-score = 0.97, R) >droMoj3.scaffold_6540 3288780 86 - 34148556 -------------------GCGCAUUUUGUCGAUUGACAAUCGACAGUGGAGCAGCGUCAAAGGGCGAUUGCUUAAC---UGCACUCCAUCAACAUAAAUCACUCAUA -------------------..(((...(((((((.....)))))))((.((((((((((....)))).)))))).))---)))......................... ( -23.20, z-score = -1.86, R) >droGri2.scaffold_14830 3211841 99 - 6267026 ---------AAGUAUUUCCACGUAAUGUGUCGAUUGACGUUUGACAGUUAAACUGUUUGAAAGGGCCAUCGCUUUACGUGUGCACUCCAUCAACAUAAAUCACUCAUA ---------..(((....(((((((...(.((((.(.(.((((((((.....)))))..))).).).))))).))))))))))......................... ( -17.40, z-score = 0.59, R) >consensus UCGACAUAAGUCCUUGCACAUCAACUCAAUUGAUGACCCUUUGGCAGUUUAACUGCCUCAACA_____UCGCUUAAU__GUGCACUCCAUCAACAUAAAUCACUCAUA ...............................(((........(((((.....))))).............((.........)).....)))................. ( -8.23 = -8.26 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:19 2011