| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,225,759 – 4,225,852 |
| Length | 93 |
| Max. P | 0.582823 |
| Location | 4,225,759 – 4,225,852 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.68 |
| Shannon entropy | 0.44867 |
| G+C content | 0.36993 |
| Mean single sequence MFE | -19.39 |
| Consensus MFE | -11.51 |
| Energy contribution | -11.32 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4225759 93 + 27905053 ---------------CGUUUCAGUCGCUUCUGUCUGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUCUGAGC---GUGGCAUCGUUC- ---------------.......(((((...((((........))))((((...(.(..(((((((............)))))))..).).))))..---))))).......- ( -20.10, z-score = -1.20, R) >droSim1.chr3R 10478083 88 - 27517382 ---------------CGUUUCAGUCGCUUCUGUCUGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUCUGAGC--------AUCGUUC- ---------------.(((.(((..(((..((((........))))..)))....(..(((((((............)))))))..)...))))))--------.......- ( -17.70, z-score = -1.40, R) >droSec1.super_0 3516677 88 - 21120651 ---------------CGUUUCAGUCGCUUCUGUCUGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUCUGAGC--------AUCGUUC- ---------------.(((.(((..(((..((((........))))..)))....(..(((((((............)))))))..)...))))))--------.......- ( -17.70, z-score = -1.40, R) >droYak2.chr3R 8304749 93 + 28832112 ---------------CGUUUCAGUCGCUGCUGUCUGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUCUGAGC---GUGGCAUCGUUC- ---------------.......(((((.((((((........))))((((...(.(..(((((((............)))))))..).).))))))---))))).......- ( -22.00, z-score = -1.36, R) >droEre2.scaffold_4770 404513 93 - 17746568 ---------------CGUUUCCGUCGCUUCUGUCUGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUCUGAGC---GUGGCAUCGUUC- ---------------((...(((.(((...((((........))))((((...(.(..(((((((............)))))))..).).))))))---))))...))...- ( -21.10, z-score = -1.63, R) >droAna3.scaffold_13340 19528893 93 - 23697760 ---------------CUCUCCAGCCGCUUCUGUCCGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUACAUUACAAUUAGUGAUCUCUGAGC---GUCCCAUCGUUC- ---------------..........(((..((.(((.....)))))..)))....(..(((((((............)))))))..).....((((---(......)))))- ( -17.10, z-score = -0.63, R) >dp4.chr2 23190389 78 + 30794189 ----------------------UGCUUCUCCGUCUGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUCUCAGC---GUUC--------- ----------------------.(((..((((...((((((..((....))..))))))....))))......(((((.....))))).....)))---....--------- ( -13.60, z-score = -1.02, R) >droPer1.super_3 5962785 78 + 7375914 ----------------------UGCUUCUCCGUCUGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUCUCAGC---GUUC--------- ----------------------.(((..((((...((((((..((....))..))))))....))))......(((((.....))))).....)))---....--------- ( -13.60, z-score = -1.02, R) >droWil1.scaffold_181089 791435 102 + 12369635 -------CGUCUCUGUCCGGUUGUUGUUUCUGUCUCUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUUUGAGC---GUGGCCCGGACUC -------.......((((((..((..(...((((........))))...(((((.(..(((((((............)))))))..)....)))))---)..)))))))).. ( -25.70, z-score = -2.29, R) >droVir3.scaffold_13047 7352822 93 + 19223366 ---------CGUUUUC---CUUGUUG---CCGUUUCUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUUUGAGC---AUGGCAUCGUUC- ---------.......---...(.((---((((((((((.((((((..........))))))))))))))...(((((.....)))))........---..)))).)....- ( -18.90, z-score = -1.17, R) >droMoj3.scaffold_6540 3271132 96 + 34148556 ---------CGUCUGGAAGCUUGUUG---CCGUUUCUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUUUGAGC---GUGGCAUCGUUC- ---------.......(((((...((---(((.........)))))..)))))..(..(((((((............)))))))..).....((((---(......)))))- ( -21.60, z-score = -0.98, R) >droGri2.scaffold_14830 3195023 111 + 6267026 CGUCAUCGUUGUCUGUAUGUUUGUUGUUGCUGUCUCUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUUUGAGCAACGUAGCAUGGUUG- ...............((((((...((((((((((........)))..........(..(((((((............)))))))..)......))))))).))))))....- ( -23.60, z-score = -0.94, R) >consensus _______________CGUUUCAGUCGCUUCUGUCUGUAAAUUGGCAUUAGUUUGUUUGCUAAUUGGAAAUUAAAUUACAAUUAGUGAUCUCUGAGC___GUGGCAUCGUUC_ ...............................(((........))).((((...(.(..(((((((............)))))))..).).)))).................. (-11.51 = -11.32 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:18 2011