| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,220,247 – 4,220,346 |
| Length | 99 |
| Max. P | 0.579329 |
| Location | 4,220,247 – 4,220,346 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 78.03 |
| Shannon entropy | 0.40817 |
| G+C content | 0.46613 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -16.85 |
| Energy contribution | -16.55 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4220247 99 + 27905053 CAGUUGCGUUGUCACCUCCUCUGUGGCUAUGCUGGUCAUCUCCAUGACACUGGUUUCCAUUCCAGUUCGGUCA-----AAAAAAAAAAGAUCGGAAAAAAAAUG-- .....((((.(((((.......))))).))))..(((((....))))).((((........))))(((((((.-----..........))))))).........-- ( -23.90, z-score = -2.02, R) >droSim1.chr3R 10472628 97 - 27517382 CCGUUGCGUUGUCACCUUCUCUGUGGCUAUGCUGGUCAUCUCCAUGACACUGGUUUCCAUUCCAGUCCGGGUA-----CAAAAAAAAGAACGGGGAAAAAUG---- (((((((((.(((((.......))))).))))(((((((....)))))(((((........))))).......-----))........))))).........---- ( -24.80, z-score = -0.64, R) >droSec1.super_0 3511271 96 - 21120651 CCGCUGCGUUGUCACCUUCUCUGUGGCUAUGCUGGUCAUUUCCAUGACACUGGUUUCCAUUCCAGUCCGGGUA------AAAAAAAAGAACGGGGAAAAAUG---- ..(((((((.(((((.......))))).)))).)))..(((((.....(((((........)))))(((....------...........))))))))....---- ( -23.66, z-score = -0.40, R) >droYak2.chr3R 8298850 106 + 28832112 CGGUUGCGUUGUCACCUUCUCUGUGGCUGUGCUGGUCAUCUCCAUGACACUGGUUUCCAUUCCAGUCCGGUCCGGUUCAAAAAAAAAGGAAAACAACAAAAAUUUG .......(((((..((((.....((((((..((((((((....)))))(((((........))))).)))..))).)))......))))...)))))......... ( -27.00, z-score = -1.33, R) >droEre2.scaffold_4770 399027 98 - 17746568 CGGUUGCGUUGUCACCUUCUCUGUGGCUGUGCUGGUCAUCUCCAUGACACUGGUUUC-AUUUCAGUCCGGUCC-----AAAAAGAAAAGACAACA--AAAAAUUUG .......((((((...((((...((((((..((((......(((......)))....-...))))..))).))-----)...))))..)))))).--......... ( -25.72, z-score = -1.61, R) >droAna3.scaffold_13340 19523722 80 - 23697760 CGGUUGCGUUGUCACCUUCUCUGUGGCUAUGCUGGUCAUCUCCAUGACAUUGUUCUCCAUUCCAGUCUGGGCA-----AAAAUUG--------------------- .....((((.(((((.......))))).))))..(((((....))))).((((((.............)))))-----)......--------------------- ( -16.82, z-score = -0.25, R) >consensus CGGUUGCGUUGUCACCUUCUCUGUGGCUAUGCUGGUCAUCUCCAUGACACUGGUUUCCAUUCCAGUCCGGGCA_____AAAAAAAAAGGACAGGAAAAAAAA____ .....((((.(((((.......))))).))))..(((((....)))))(((((........)))))........................................ (-16.85 = -16.55 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:16 2011