| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,199,301 – 4,199,407 |
| Length | 106 |
| Max. P | 0.868654 |
| Location | 4,199,301 – 4,199,407 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 81.31 |
| Shannon entropy | 0.35584 |
| G+C content | 0.43910 |
| Mean single sequence MFE | -15.92 |
| Consensus MFE | -11.03 |
| Energy contribution | -11.83 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4199301 106 - 27905053 UAAACGCAUUCUGUGCGCUCUAAUUGCGCCAUUAAAAGAUGACAAACAAAAUCCCCCGGUCUCCAGAGACAGACUACAGAUUAUUCCAUACUUCUCUCCACCCCCA .........(((((((((.......))))((((....)))).................((((....)))).....))))).......................... ( -15.40, z-score = -1.26, R) >droSim1.chr3R 10451113 102 + 27517382 UAAACGCAUUCUGUGCGCUCUAAUUGCGCCAUUAAAAGAUGACAAACAAAAUCCCCCGGUCUCCAG----AGACUACAGAUUAUUCCAUACUUCUCUACCCCUCCC .........(((((((((.......))))((((....))))................(((((....----)))))))))).......................... ( -16.30, z-score = -2.16, R) >droSec1.super_0 3490500 98 + 21120651 UAAACGCAUUCUGUGCGCUCUAAUUGCGCCAUUAAAAGAUGACAAACAAAAUCCCCCGGUCUCCAG----AGACUACAGAUUAUUCCA---UUCUCUACCCCCCC- .........(((((((((.......))))((((....))))................(((((....----))))))))))........---..............- ( -16.30, z-score = -2.41, R) >droYak2.chr3R 8277914 100 - 28832112 UAAACGCAUUCUGUGCGCUCUAAUUGCGCCAUUAAAAGAUGACAAACAAAAUGCCCCAGUCUCCAG----AGACUACAGAUUAUUCCAUACUUUUCUCGCCCCC-- .....(((((.(((((((.......))))((((....))))....))).)))))...(((((....----))))).............................-- ( -18.90, z-score = -2.83, R) >droEre2.scaffold_4770 376268 95 + 17746568 UAAACGCAUUCUGUGCGCUCUAAUUGCGCCAUUAAAAGAUGACAAACAAAAUGCCC--GUCUCCAG----AGACUACAGAUUAUUCCAUACUUUCUCCCCC----- .....(((((.(((((((.......))))((((....))))....))).)))))..--((((....----))))...........................----- ( -17.80, z-score = -3.02, R) >droWil1.scaffold_181089 763765 95 - 12369635 UAAACGCAUUCUGUGUGCUCUAAUUGCGCCAUUAAAAGAUGACAAACAAAA----------ACGAAAAAGAAAAAAAAGGAAAGCCAAACCUUCGCCGCAGCCUC- .....((.((((..((((.......))))((((....))))..........----------.......))))......((.(((......)))..))))......- ( -10.80, z-score = 0.98, R) >consensus UAAACGCAUUCUGUGCGCUCUAAUUGCGCCAUUAAAAGAUGACAAACAAAAUCCCCCGGUCUCCAG____AGACUACAGAUUAUUCCAUACUUCUCUCCCCCCCC_ .........(((((((((.......))))((((....))))................(((((........)))))))))).......................... (-11.03 = -11.83 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:12 2011