| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,741,992 – 6,742,085 |
| Length | 93 |
| Max. P | 0.638093 |
| Location | 6,741,992 – 6,742,085 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 69.64 |
| Shannon entropy | 0.50354 |
| G+C content | 0.37216 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.22 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6741992 93 - 23011544 UUGGGUUCAACGCAUCCUGGCGAAAGUUCUUUCACUUUUUCAGGGGCGGAUUAAGGUGAUAACUAACUAGAUAUAAGUAAUCGGUAAACAUUU--------------- ....(((...(((.((((((.((((((......)))))))))))))))(((((.....(((.((....)).)))...)))))....)))....--------------- ( -18.50, z-score = -0.63, R) >droSim1.chr2L 6541930 90 - 22036055 CUGGGUUCAACGCAUCCUGGCGAAAGUUCAUUCAA-UUUUCAGGGGCGGAUU-AGGUGAUAACUAACUAGUUAUAAUAGAUAGAUUUUUAAU---------------- ((((......(((.(((((((....))........-....))))))))..((-((.......))))))))......................---------------- ( -15.50, z-score = -0.04, R) >droSec1.super_3 2280736 91 - 7220098 CUGGGUUCAACGCAUCCUGGCGAAAGUUCAUUCAAUUUUUCAGGGGCGGAUU-AGGUGAUAACUAACUAGUUCCAAUAGAUAGAUUGGUAAU---------------- ((((......(((.(((((..(((((((.....)))))))))))))))..((-((.......))))))))..(((((......)))))....---------------- ( -19.50, z-score = -0.49, R) >droYak2.chr2L 16156386 93 + 22324452 AUGGGUUCAACGCAUCCUGGCGAAAGUUCCUUCACUUUUUCAGGAGCGGAUUAAGGUGAUAAUAAACUAUUUGUAAGUACUUAGUAAGCAUUU--------------- ....(((...(((.((((((.((((((......))))))))))))))).((((((...((((........)))).....)))))).)))....--------------- ( -20.10, z-score = -0.82, R) >droAna3.scaffold_12916 8321300 108 - 16180835 UAGAGUUCAAUGCAUCCUGGGGAAAGUUCUUUAACUUUACCAGGUGCGGAUUCAAUCAAGUUAAAGGCAUUUACAAAUUAAAGUUUUUGUUUUAUGUUUUUUGUUCCU ..((((((...(((.(((((..((((((....)))))).)))))))))))))).........((((((((..(((((........)))))...))))))))....... ( -28.50, z-score = -3.17, R) >consensus CUGGGUUCAACGCAUCCUGGCGAAAGUUCAUUCACUUUUUCAGGGGCGGAUU_AGGUGAUAACUAACUAGUUAUAAGUAAUAGAUUAGCAUUU_______________ ..........(((.((((((.((((((......)))))))))))))))......(((........)))........................................ (-12.10 = -12.22 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:49 2011