| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,163,525 – 4,163,627 |
| Length | 102 |
| Max. P | 0.985222 |
| Location | 4,163,525 – 4,163,627 |
|---|---|
| Length | 102 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.22 |
| Shannon entropy | 0.39856 |
| G+C content | 0.55964 |
| Mean single sequence MFE | -35.80 |
| Consensus MFE | -23.98 |
| Energy contribution | -24.48 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4163525 102 + 27905053 ------------GGCGGAGCGGGGGCAUUGAAGUUGGGGACGCAAAUCGAGUUGGAGACGAAAGCGGCAGCGAGUUCGCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU ------------(.((.....(((((.((.((((.(....)((((..((((((((((.((((.((....))...))))))))).))))))))))))).)).)))))..)).).. ( -36.80, z-score = -1.43, R) >droSim1.chr3R 10415801 110 - 27517382 ----GUCGGAGAGGGGAAGGGGGGGCAUUGAAGUUGGGGACGCAAAUCGAGUUGGAGACGAAAGCGGCAGCGAGUUCGCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU ----((((..((((.(..(((..............(....)((((..((((((((((.((((.((....))...))))))))).))))))))).)))...).))))..)))).. ( -37.00, z-score = -1.55, R) >droSec1.super_0 3454852 114 - 21120651 GUCGGAGAGGGAGAGGGGGGGGGGGCACUGAAGUUGGGGACGCAAAUCGAGUUGGAGACGAAAGCGGCAGCGAGUUCGCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU ((((..(((((.(((..(.((.(((((.((((((.(((..(((...(((..(((....)))...)))..)))..)))))))))))))).)).).)))...).))))..)))).. ( -39.20, z-score = -1.66, R) >droYak2.chr3R 8240772 100 + 28832112 --------------GGAGGAGGGGGCGUUGAAGUUGGGGACGCAAAUCGAGUUGGAGACGAAAGCGGCAGCGAGUUCGCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU --------------.(..(..((((((((.((((.(....)((((..((((((((((.((((.((....))...))))))))).))))))))))))).))))))))..)..).. ( -39.70, z-score = -2.97, R) >droEre2.scaffold_4770 337652 100 - 17746568 --------------GGGGAAGGGGACGUUGAAGUUGGGGACGCAAAUCGAGUUGGAGACGAAAGCGGCAGCGAGUUCGCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU --------------...........(((((((((.(....)((((..((((((((((.((((.((....))...))))))))).)))))))))........))))))))).... ( -36.50, z-score = -2.27, R) >droAna3.scaffold_13340 13262664 85 + 23697760 -----------------GAAGGAGACGAUGAAGCUGGGGACG------------GAGACGAAAGCGGCAGCGAGUUUGCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU -----------------...(....)......((((..((((------------....))..(((((((((((((.((...)).))))))))).......))))))..)))).. ( -29.81, z-score = -1.99, R) >dp4.chr2 14688351 86 + 30794189 ---------------------ACAGAGAUGAAGUUGGGGGGA-------AGUUGGAGACGACGAAGGCAGCGAGUUCUCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU ---------------------......(((..(((((((.(.-------.((((....)))).((((((((((((.........))))))))).)))...).)))))))..))) ( -33.70, z-score = -3.37, R) >droPer1.super_0 6095884 86 - 11822988 ---------------------ACAGAGAUGAAGUUGGGGGGA-------AGUUGGAGACGACGAAGGCAGCGAGUUCUCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU ---------------------......(((..(((((((.(.-------.((((....)))).((((((((((((.........))))))))).)))...).)))))))..))) ( -33.70, z-score = -3.37, R) >consensus ______________GG_GGAGGGGGCGUUGAAGUUGGGGACGCAAAUCGAGUUGGAGACGAAAGCGGCAGCGAGUUCGCUUCAUGCUCGUUGCACUUGAACGCUUCAACGGCAU ............................((..(((((((............(((....))).....(((((((((.........))))))))).........)))))))..)). (-23.98 = -24.48 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:10 2011