| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,125,862 – 4,125,954 |
| Length | 92 |
| Max. P | 0.763376 |
| Location | 4,125,862 – 4,125,954 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 76.02 |
| Shannon entropy | 0.47584 |
| G+C content | 0.39183 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -10.96 |
| Energy contribution | -10.96 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4125862 92 + 27905053 UUUCAGCACGUUUUCCCACAUGUGCGAAAGUUUUGAAUC-UUUCCCAAAAAUAUGC--------ACGCGUGUGGUCACUUAACCGAAACGGAGAACCGAUU------- .........((((((((((.((((((....(((((....-.....)))))...)))--------))).)))((((......))))....))))))).....------- ( -22.00, z-score = -1.37, R) >droSim1.chr3R 10384142 92 - 27517382 UUUCAGCACGUUUCCCCACAUGUGCGAAAGUUUUGAAUA-UUUCCCAAAAAUAUGC--------ACGCGUGUGGUCACUUAACCGAAACGGAGAACCGAUC------- ........((((((..(((.((((((....(((((....-.....)))))...)))--------))).))).(((......)))))))))...........------- ( -20.60, z-score = -1.08, R) >droSec1.super_0 3417336 92 - 21120651 UUUCAGCACGUUUCCCCACAUGUGCGAAAGUUUUGAAUA-UUUCCCAAAAAUAUGC--------ACGCGUGUGGUCACUUAACCGAAACGGAGAACCGAUC------- ........((((((..(((.((((((....(((((....-.....)))))...)))--------))).))).(((......)))))))))...........------- ( -20.60, z-score = -1.08, R) >droYak2.chr3R 8201078 92 + 28832112 UUUCAGCACGUUUCCCCACAUGUGCGAAAGUUUUGAAUA-UUUCCCAAAAAUAUGC--------ACGCGUGUGGUCACUUAACCGAAACGGAGAACCGAUC------- ........((((((..(((.((((((....(((((....-.....)))))...)))--------))).))).(((......)))))))))...........------- ( -20.60, z-score = -1.08, R) >droEre2.scaffold_4770 298840 94 - 17746568 UUUCAGCACGUUUCCCCACAUGUGCGAAAGUUUUGAAUA-UUUCCCAAAAAUAUGC--------ACGCGUGUGGUCACUUAACUGAAACGGAGAACCAAUCCG----- ((((((...((..((.(((.((((((....(((((....-.....)))))...)))--------))).))).))..))....))))))((((.......))))----- ( -24.00, z-score = -2.40, R) >droAna3.scaffold_13340 13223467 91 + 23697760 UUUCGGCACGUUUCCCCACAUGUGCGAAAGUUUUGAAUA-UUUUCUAAAAAUAUUC--------ACGCGUGUGAUCACUUAAGCGAAACGGAAAACAAUC-------- (((((...(((((...(((((((((....)...((((((-(((.....))))))))--------))))))))).......)))))...))))).......-------- ( -22.10, z-score = -2.14, R) >dp4.chr2 14647625 93 + 30794189 AUUCAGCACGUUUCUUCACAUGUGCAAAAGUUUUGAAUAUUUUUCUAAAAAUAUUC--------ACGCGUGUGGUCACUUAAACGGAACGGAAAACCAAUC------- ........((((((..((((((((.........((((((((((....)))))))))--------)))))))))((.......))))))))...........------- ( -20.70, z-score = -2.23, R) >droPer1.super_0 6052868 93 - 11822988 AUUCAGCACGUUUCUUCACAUGUGCAAAAGUUUUGAAUAUUUUUCUAAAAAUAUUC--------ACGCGUGUGGUCACUUAAACGGAACGGAAAACCAAUC------- ........((((((..((((((((.........((((((((((....)))))))))--------)))))))))((.......))))))))...........------- ( -20.70, z-score = -2.23, R) >droWil1.scaffold_181089 9568192 100 - 12369635 AUUCAGCACGUUUCUCCACAUGUGCAAAAGUUUUGAAAAAUAUUCUAAAAAUAUUU--------ACGCGUGCGACCAUUUAAGCGAAACGAAGAAUCAAAAAUCAAAU .(((.((((((........))))))....((((((..(((((((.....)))))))--------.((....))..........)))))))))................ ( -15.60, z-score = -0.83, R) >droVir3.scaffold_12855 9187208 100 - 10161210 UUUUAGCACGUUUCGCCACAUGUGCAAAAGUUUUGGAAAUAUUCGGAA-AAUAUUU------ACGCGUGUGUGGUCAAU-AAACGGAACCAAACGGAGCAACACAAUU .....((.(((((.((((((..(((.(((.((((.((.....)).)))-)...)))------..)))..))))))....-)))))...((....)).))......... ( -24.10, z-score = -1.24, R) >droMoj3.scaffold_6540 7560253 101 + 34148556 UUUUAGCACGUUUCGCCACAUGUGCAAAAGUUUUGGAAAUAUUUGAAAUAAUAUUU------ACGCCUCUGUGGUCAAU-AAACGGAACGGAUCAGAACAAAACGAUU .....((((((........))))))....((((((((((((((......)))))))------.((..(((((.......-..))))).))..)))))))......... ( -20.40, z-score = -0.89, R) >droGri2.scaffold_14906 12108621 105 - 14172833 UUUUAGCACGUUUCGCCACAUGUGCAAAAGUUUUGUAAAUAUUUCCAAAUAUUUUUGGAAAUACGCGUGUGUGGUCAAU---ACAAAACGAAUCGAAACGAAUCAAUU ........(((((((((....).))....((((((((..((((((((((....))))))))))(((....))).....)---))))))).....))))))........ ( -28.10, z-score = -3.07, R) >consensus UUUCAGCACGUUUCCCCACAUGUGCAAAAGUUUUGAAUA_UUUCCCAAAAAUAUUC________ACGCGUGUGGUCACUUAAACGAAACGGAGAACCAAUC_______ ........((((((.(((((((((.........................................)))))))))..........)))))).................. (-10.96 = -10.96 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:58:08 2011