| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,722,632 – 6,722,744 |
| Length | 112 |
| Max. P | 0.690920 |
| Location | 6,722,632 – 6,722,744 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.26 |
| Shannon entropy | 0.50663 |
| G+C content | 0.46098 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -13.66 |
| Energy contribution | -15.34 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6722632 112 - 23011544 CUACCACGGAUACGGAAUUGAUUUGAUGGGGGCCCUGCGCCCCGCAACAAACUGUCAUUGCAUCAGGCCAGAUCGCAAAAAACAAACAUAUA------UCGACCUACUUUAUCAAAUA ........((((.((..(((((...((((((((.....))))).........(((..(((((((......))).))))...)))..)))..)------))))....)).))))..... ( -23.50, z-score = -0.32, R) >droSim1.chr2L 6521324 109 - 22036055 CUACCACGGAUACGGAAUUGAUUUGAU-GGGGCCCUGCGCCCCGCAACAAACUGCCAUUGCAUCAGGCCCGAUCCAAAGAAAU--AUAUAUA------UCGACCUACUUCAUCAAAAA .......((((.(((..(((((.((((-(((((.....)))))(((......))).)))).)))))..)))))))........--.......------.................... ( -27.00, z-score = -1.73, R) >droSec1.super_3 2261306 109 - 7220098 CUACCACGGAUACGGAAUUGAUUUGAU-GGGGCCCUGCGCCCCGCAACAAUCUGCCAUUGCAUCAGUCCCGAUCCAAAGAAAU--AUAUAUA------UCGACCUACUUCAUCAAAAA .......((((.(((.((((((.((((-(((((.....)))))(((......))).)))).)))))).)))))))........--.......------.................... ( -27.90, z-score = -2.30, R) >droYak2.chr2L 16134914 108 + 22324452 -------CCCCAC-AAAUUGAUUUGAUGGGGGCUCUGCGCCCC-CAAGGAACUGCCAUUACAUCAAUCCCGUUUGUGCUAAAGCCGGAAACAAG-AACCCUACAAACUUUGGGAAAAU -------.((((.-..((((((.((((((((((.....)))))-)..((.....)))))).))))))...((((((((....)).(....)...-......))))))..))))..... ( -33.50, z-score = -2.50, R) >droEre2.scaffold_4929 15638850 111 - 26641161 -----CCCCCCAUGGAAUUGAUUUGAUGGGGGCUCCGCA-CCC-CAAAGAACUGCCAUUACAUCAAUCGCGAUUGUGUUAAAGCCAGAAACAAACAAGUCUACAUACUUAGUAAGAAU -----.......((((.(((.((((.(((((((...)).-)))-)).....((((....(((.((((....)))))))....).)))...))))))).))))................ ( -21.70, z-score = -0.09, R) >consensus CUACCACGGAUACGGAAUUGAUUUGAUGGGGGCCCUGCGCCCCGCAACAAACUGCCAUUGCAUCAGUCCCGAUCGAAAGAAAG__AGAUAUA______UCGACCUACUUCAUCAAAAA ............(((.((((((.((((((((((.....)))))(((......)))))))).)))))).)))............................................... (-13.66 = -15.34 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:48 2011