Locus 91

Sequence ID	dm3.chr2L
Location	653,970 – 654,075
Length	105
Max. P	0.983899

overview

Window 4

Location	653,970 – 654,075
Length	105
Sequences	3
Columns	125
Reading direction	forward
Mean pairwise identity	74.86
Shannon entropy	0.34327
G+C content	0.28135
Mean single sequence MFE	-25.53
Consensus MFE	-13.51
Energy contribution	-18.40
Covariance contribution	4.89
Combinations/Pair	1.11
Mean z-score	-3.07
Structure conservation index	0.53
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	2.15
SVM RNA-class probability	0.983899
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 653970 105 + 23011544
GUUGUUUAGUUUUAGUUUAAAGGCUGUUCAG----AUUCGAUUAGUUACGUACUGAAUCUUAAAUGUUAGAUCAAAUAAUAUCUUCUUCUU--------------CUAAACACUUCUUUGUGU--
(((((((.((((..((((((.(...((((((----...((........))..)))))))))))))...)))).)))))))...........--------------....((((......))))-- ( -14.50, z-score =   0.21, R)
>droSim1.chr2L 664886 120 + 22036055
-----UUAGAUUUAGGUUGAAUGCUGUUCGAAUCAAUUCGAUAAGUAAAAAACUGAAUCUUAAAUGUUAGGUAAAACAAUACCUUCUUAUUUAAUCAACCAGAGUCUAAACACUUUUCUUUGUGU
-----((((((((.((((((.((((..(((((....)))))..))))............(((((((..(((((......)))))...))))))))))))).))))))))((((........)))) ( -33.20, z-score =  -5.26, R)
>droSec1.super_14 635852 120 + 2068291
-----UUAGAUUUAGGUUGAAUGCUGUUCGAAUCAAUUCGAUAAGUAAAAAACGUAAUCUUAAAUGUUAGGUAAAAUAAUAUCUUCUUAUUUAACCAACCAGAGUCUAAACACUUUUCUUUGUGU
-----((((((((.(((((..((((..(((((....)))))..))))............(((((((..(((((......)))))...))))))).))))).))))))))((((........)))) ( -28.90, z-score =  -4.16, R)
>consensus
_____UUAGAUUUAGGUUGAAUGCUGUUCGAAUCAAUUCGAUAAGUAAAAAACUGAAUCUUAAAUGUUAGGUAAAAUAAUAUCUUCUUAUUUAA_CAACCAGAGUCUAAACACUUUUCUUUGUGU
.....((((((((.(((((..((((..(((((....)))))..))))............(((((((..(((((......)))))...))))))).))))).))))))))((((........)))) (-13.51 = -18.40 +   4.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:30 2011