| Sequence ID | dm3.chr3R |
|---|---|
| Location | 4,063,327 – 4,063,417 |
| Length | 90 |
| Max. P | 0.510480 |
| Location | 4,063,327 – 4,063,417 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.29 |
| Shannon entropy | 0.61056 |
| G+C content | 0.59703 |
| Mean single sequence MFE | -37.39 |
| Consensus MFE | -18.63 |
| Energy contribution | -18.33 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 4063327 90 + 27905053 ACUGCCCGGCGGCUGUGGCAGAUGUUUUAGUUCCUCCAGCUGGGUGCGCAAUUUCAGGCUCAUGCUGGGCACCUGAU---------------C--ACUGCCUCCGCC---------- .......(((((....(((((.((..((((....(((((((((((............))))).))))))...)))).---------------)--)))))).)))))---------- ( -33.00, z-score = -0.07, R) >droGri2.scaffold_14906 6803730 117 - 14172833 GCUGCCCAGCGGCUCUGGCAGUCGCUUCAGUUCGUCCAGCUGGGUGCGCAGUAUAAAGCUCAUGCUAUGAUGCUGUUUCUCCGUCUGCUCAUCUAAUGGCAAACUAAGGCUGCCGGC (((((...))))).((((((((((((((((((.....))))))).))(((((((..(((....)))...)))))))......((.((((........)))).))...))))))))). ( -43.60, z-score = -1.34, R) >droWil1.scaffold_181130 1221050 93 - 16660200 GCUUCCCAGAGGCUGUGGCAUUUGUUUCAGUUCAUCUAAUUGGCUGCGUAGAAUUUGGCUCAUGCUGGGCACCUCAU------------CGUC--AUAGCUUCCGAC---------- ........(((((((((((((((....((((.((......))))))....))))...((((.....)))).......------------.)))--))))))))....---------- ( -25.90, z-score = -0.33, R) >droPer1.super_0 7451882 111 + 11822988 GCUGCCCAGCGGCUGGGGCAGGUGUUUAAGCUCUUCCAGUUGUGAACGUAACUUAAAGCUCAUGCUGGGCACCGCCUGCUCCUCGGAAGUGUU--AUGGCUUCCGCUGCUGCC---- ......(((((((.((((((((((((((((..(((((....).))).)...))))))((((.....))))..))))))))))..((((((...--...)))))))))))))..---- ( -46.80, z-score = -1.95, R) >dp4.chr2 17789823 111 - 30794189 GCUGCCCAGCGGCUGGGGCAGGUGCUUGAGCUCUUCCAGUUGUGAACGUAACUUAAAGCUCAUGCUGGGCACCGCCUGCUCCUCGGACGUGCU--AUGGCUUCCGCUGCUGCC---- ......(((((((.(((((((((((.((((((.....(((((......)))))...)))))).)).((...)))))))))))..(((...((.--...)).))))))))))..---- ( -45.50, z-score = -0.76, R) >droAna3.scaffold_13340 21521613 84 + 23697760 GCUACCCAGUGGCUGGGGCAGGUGUUUCAGAUCAUCCAGUUGCUGGCGAAGCUUCAGACUCAUACUCGGU------U---------------C--ACUGCUUCCGGC---------- (((..((((..((((((...(((.......))).))))))..)))).(((((....((((.......)))------)---------------.--...))))).)))---------- ( -27.80, z-score = -0.47, R) >droYak2.chr3R 8139074 90 + 28832112 ACUGCCCAGCGGCUGGGGCAGGUGCUUCAGUUCCUCCAGCUGGGUGCGCAAUUUUAGGCUCAUGCUGGGCAGCUGCU---------------C--ACUGCCUGCGCC---------- ...((((((((((((((((....)))))))))......)))))))((((.......(((....)))((((((.....---------------.--.)))))))))).---------- ( -41.20, z-score = -0.35, R) >droEre2.scaffold_4770 235589 90 - 17746568 ACUGCCCAGCGGCUGGGGCAGAUGCUUCAGUUCCUUCAGCUGGGUGCGCAAUCUUAGGCUCAUGCUGGGCACCUGCU---------------C--ACUGCCUCCGCC---------- ...((((((((((((((((....)))))))))......)))))))(((.......((((....(.(((((....)))---------------)--)).)))).))).---------- ( -34.30, z-score = 0.29, R) >droSec1.super_0 3355050 90 - 21120651 ACUGCCCGGCGGCUGGGGCAGAUGUUUCAGUUCCUCCAGCUGGGUGCGCAAUUUUAGGCUCAUGCUGGGCAACUGAU---------------C--ACUGCCUCCGCC---------- .......(((((...((((((.((..((((((.(.((((((((((............))))).)))))).)))))).---------------)--))))))))))))---------- ( -39.60, z-score = -1.81, R) >droSim1.chr3R 10322337 90 - 27517382 ACUGCCCGGCGGCUGGGGCAGAUGUUUCAGUUCCUCCAGCUGGGUGCGCAAUUUUAGGCUCAUGCUGGGCACCUGAU---------------C--ACUGCCUCCGCC---------- .......(((((...((((((.((..((((....(((((((((((............))))).))))))...)))).---------------)--))))))))))))---------- ( -36.20, z-score = -0.57, R) >consensus ACUGCCCAGCGGCUGGGGCAGAUGUUUCAGUUCCUCCAGCUGGGUGCGCAAUUUUAGGCUCAUGCUGGGCACCUGAU_______________C__ACUGCCUCCGCC__________ ..((((((((((((........(((..(((((.....)))))...)))........))))...)))))))).............................................. (-18.63 = -18.33 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:57:58 2011